Literature DB >> 1627539

Purine nucleoside phosphorylase. Inosine hydrolysis, tight binding of the hypoxanthine intermediate, and third-the-sites reactivity.

P C Kline1, V L Schramm.   

Abstract

Purine nucleoside phosphorylase from calf spleen is a trimer which catalyzes the hydrolysis of inosine to hypoxanthine and ribose in the absence of inorganic phosphate. The reaction occurs with a turnover number of 1.3 x 10(-4) s-1 per catalytic site. Hydrolysis of enzyme-bound inosine occurs at a rate of 2.0 x 10(-3) s-1 to form a stable enzyme-hypoxanthine complex and free ribose. The enzyme hydrolyzes guanosine; however, a tightly-bound guanine complex could not be isolated. The complex with hypoxanthine is stable to gel filtration but can be dissociated by acid, base, or mild denaturing agents. Following gel filtration, the E.hypoxanthine complex dissociates at a rate of 1.9 x 10(-6) s-1 at 4 degrees C and 1.3 x 10(-4) s-1 at 30 degrees C. The dissociation constant for the tightly-bound complex of enzyme-hypoxanthine is estimated to be 1.3 x 10(-12) M at 30 degrees C on the basis of the dissociation rate. The stoichiometry of the reaction is 1 mol of hypoxanthine bound per trimer. The reaction is reversible since the same complex can be formed from enzyme and hypoxanthine. Addition of ribose 1-phosphate to the complex results in the formation of inosine without release of hypoxanthine. Thus, the complex is catalytically competent. Inorganic phosphate or arsenate prevents formation of the tightly-bound E.hypoxanthine complex from inosine or hypoxanthine. Direct binding studies with hypoxanthine in the presence of phosphate result in 3 mol of hypoxanthine bound per trimer with a dissociation constant of 1.6 microM. In the absence of phosphate, three hypoxanthines are bound, but higher hypoxanthine concentrations cause the release of two of the hypoxanthines with an apparent inhibition constant of 130 microM. The results establish that enzymatic contacts with the nucleoside alone are sufficient to destabilize the N-glycosidic bond. In the absence of phosphate, water attacks slowly, causing net hydrolysis. The hydrolytic reaction leaves hypoxanthine stranded at the catalytic site, tightly bound to the enzyme with a conformation related to the transition state. In the phosphorolysis reaction, ribose 1-phosphate causes relaxation of this conformation and rapid release of hypoxanthine.

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Year:  1992        PMID: 1627539     DOI: 10.1021/bi00141a003

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

1.  Altered enthalpy-entropy compensation in picomolar transition state analogues of human purine nucleoside phosphorylase.

Authors:  Achelle A Edwards; Jennifer M Mason; Keith Clinch; Peter C Tyler; Gary B Evans; Vern L Schramm
Journal:  Biochemistry       Date:  2009-06-16       Impact factor: 3.162

2.  Femtosecond dynamics coupled to chemical barrier crossing in a Born-Oppenheimer enzyme.

Authors:  Rafael G Silva; Andrew S Murkin; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-07       Impact factor: 11.205

3.  Immucillin-H binding to purine nucleoside phosphorylase reduces dynamic solvent exchange.

Authors:  F Wang; R W Miles; G Kicska; E Nieves; V L Schramm; R H Angeletti
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

4.  Transition-state analysis of Trypanosoma cruzi uridine phosphorylase-catalyzed arsenolysis of uridine.

Authors:  Rafael G Silva; Mathew J Vetticatt; Emilio F Merino; Maria B Cassera; Vern L Schramm
Journal:  J Am Chem Soc       Date:  2011-06-03       Impact factor: 15.419

5.  Transition state analysis of thymidine hydrolysis by human thymidine phosphorylase.

Authors:  Phillip A Schwartz; Mathew J Vetticatt; Vern L Schramm
Journal:  J Am Chem Soc       Date:  2010-09-29       Impact factor: 15.419

6.  Ribocation transition state capture and rebound in human purine nucleoside phosphorylase.

Authors:  Mahmoud Ghanem; Andrew S Murkin; Vern L Schramm
Journal:  Chem Biol       Date:  2009-09-25

7.  Remote mutations and active site dynamics correlate with catalytic properties of purine nucleoside phosphorylase.

Authors:  Suwipa Saen-Oon; Mahmoud Ghanem; Vern L Schramm; Steven D Schwartz
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

8.  Isotope-specific and amino acid-specific heavy atom substitutions alter barrier crossing in human purine nucleoside phosphorylase.

Authors:  Javier Suarez; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-24       Impact factor: 11.205

9.  Role of ionization of the phosphate cosubstrate on phosphorolysis by purine nucleoside phosphorylase (PNP) of bacterial (E. coli) and mammalian (human) origin.

Authors:  Anna Modrak-Wójcik; Aneta Kirilenko; David Shugar; Borys Kierdaszuk
Journal:  Eur Biophys J       Date:  2007-07-17       Impact factor: 1.733

Review 10.  Enzymatic Transition States and Drug Design.

Authors:  Vern L Schramm
Journal:  Chem Rev       Date:  2018-10-18       Impact factor: 60.622

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