| Literature DB >> 16261297 |
Farooq A Kiani1, Matthias Hofmann.
Abstract
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Mesh:
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Year: 2005 PMID: 16261297 PMCID: PMC2441496 DOI: 10.1007/s00894-005-0037-3
Source DB: PubMed Journal: J Mol Model ISSN: 0948-5023 Impact factor: 1.810
Fig. 1Numbering scheme for the 11-vertex nido-cluster
Fig. 2a A heteroatom (Het) at a 5 k apical position (vertex number 1, structure B) or in the middle belt (positions 2 through 6, structure C) rather than at the open face (positions 7 through 11, structure A) represent the structural features Het5k(1) and Het5k(2), respectively. b Heteroatom adjacent (E) rather than heteroatom apart isomer (D) represent the structural feature HetHet′, where Het and Het′ may be equal or different heteroatoms. n and n′ are the number of electrons donated by two heteroatoms (Het and Het′) c μ-H-8,9 (hydrogen bridge adjacent to heteroatom, H) rather than μ-H-9,10 (hydrogen bridge far away from heteroatom, F) in nido-7-[HetB10H11](4−n)-, represent the structural feature Het(H). Hydrogen as an exo-substituent (G) rather than bridged between positions 9 and 10 (F) produces the structural feature HetR
Relative trends of energy penalties [kcal mol−1] for different features in 11-vertex nido-hetero(carba)boranes and -borates
aHeteroatom
bElectronegativity values, see Pauling, L. The Nature of the Chemical Bond. Cornell University Press: Ithaca, New York, 1960
cCovalent radii in pico meter, see Huheey, J.E.; Keiter, E.A.; Keiter, R.L. : , 4th edition, HarperCollins, New York, USA, 1993
dEnergy penalty for two identical adjacent heteroatoms in the 11-vertex nido-cluster
eEnergy penalty for a heteroatom adjacent to a carbon atom in the 11-vertex nido-cluster
fHet5k(1) is the structural feature for a heteroatom at a 5k apical position (vertex number 1) rather than the ideal 4k open face positions
gHet5k(2) is the structural feature for a heteroatom at vertices 2 through 6 rather than at the ideal 4k open face positions
hStructural feature Het(H) denotes the amount of destabilization caused by a heteroatom adjacent to a bridged hydrogen atom
iStatistically fitted values taken from ref. 31. For all other heteroatoms, energy penalties are estimated by comparing two suitable reference structures which differ with respect to one structural feature
jInitial starting 11-vertex nido-oxaborane geometries did not survive geometry optimizations due to the expected very high energy penalties of the oxygen atom
kThe NRNR energy penalty could not be accurately obtained as the structure rearranged. The rough energy penalty derived by fixing N7-B2 and N8-B2 distances to be 1.775 Å was even higher (76.5 kcal mol−1)
lThe energy penalty for SS (45 kcal mol−1) also needed to be derived by fixing the S(7)-S(8) bond distance to be 2.34 Å
Energy penalties [kcal mol−1] for HetPR and HetP together with covalent radius of heteroatom (Het)
| HetHet′ | RHet [pm] | |
|---|---|---|
| NP | 71 | 18.8 |
| CP | 77 | 15.1 |
| PP | 93 | 10.7 |
| NRPR | 71 | 42.5 |
| PRPR | 93 | 36.9 |
| SPR | 104 | 38.8 |
| SePR | 117 | 35.8 |
Fig. 3Covalent radii, HetHet and HetC energy penalties for group 14, group 15 and group 16 heteroatoms. HetHet and HetC energy penalties for heteroatoms increase with decrease in covalent radii
Fig. 4Het5k(1) and Het5k(2) energy penalties for group 14 heteroatoms decrease with decreasing covalent radii but increase for group 16 heteroatoms. Group 15 heteroatoms have mixed trends
Estimated energy penalties (Einc′), estimated relative energies (Eincrel′) and computed relative energies for thia(carba)boranes and -borates. All values are in kcal mol−1
| Compound | μ- | C5k | C(H) | CC | S5k(1)′ | S5k(2)′ | S(H)′ | SC′ | ∑ | Δ | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.0 | 2.1 | 17.0 | 52.2 | 43.8 | 6.2 | 31.2 | |||||||
| 7-SB10H12 | 8,9; 9,10 | 2 | 12.4 | 0.0 | 0.0 | 0.0 | |||||||
| 2-SB10H12 | 7,8; 9,10 | 1 | 1 | 50.0 | 37.6 | 39.8 | -2.2 | ||||||
| 1-SB10H12 | 7,8; 9,10 | 1 | 52.2 | 39.8 | 43.8 | -4.0 | |||||||
| 7-SB10H111− | 9,10 | 0.0 | 0.0 | 0.0 | 0.0 | ||||||||
| 7-SB10H111− | 8,9 | 1 | 6.2 | 6.2 | 6.2 | 0.0 | |||||||
| 2-SB10H111− | 8,9 | 1 | 43.8 | 43.8 | 44.3 | -0.5 | |||||||
| 7-SB10H102− | – | 0.0 | 0.0 | 0.0 | 0.0 | ||||||||
| 2-SB10H102− | – | 1 | 43.8 | 43.8 | 43.8 | 0.0 | |||||||
| 1-SB10H102− | – | 1 | 52.2 | 52.2 | 52.2 | 0.0 | |||||||
| 7,9-S2B9H9 | – | 0.0 | 0.0 | 0.0 | 0.0 | ||||||||
| 1,7-S2B9H9 | – | 1 | 52.2 | 52.2 | 55.5 | -3.3 | |||||||
| 7,9-SCB9H11 | 10,11 | 1 | 1 | 8.3 | 0.0 | 0.0 | 0.0 | ||||||
| 7,8-SCB9H11 | 9,10 | 1 | 1 | 33.3 | 25.0 | 25.6 | -0.6 | ||||||
| 7,8-SCB9H11 | 10,11 | 1 | 1 | 37.4 | 29.1 | 27.9 | 1.2 | ||||||
| 2,8-SCB9H11 | 9,10 | 1 | 1 | 45.9 | 37.6 | 35.0 | 2.6 | ||||||
| 7,9-SCB9H101− | – | 0.0 | 0.0 | 0.0 | 0.0 | ||||||||
| 7,8-SCB9H101− | – | 1 | 31.2 | 31.2 | 31.2 | 0.0 | |||||||
| 7,1-SCB9H101− | – | 1 | 28.0 | 28.0 | 33.3 | -5.3 | |||||||
| 1,7-SCB9H101− | – | 1 | 52.2 | 52.2 | 54.4 | -2.2 | |||||||
| 7,9,10-SC2B8H10 | – | 1 | 17.0 | 0.0 | 0.0 | 0.0 | |||||||
| 7,8,10-SC2B8H10 | – | 1 | 31.2 | 14.2 | 13.1 | 1.1 | |||||||
| 8,2,10-SC2B8H10 | – | 1 | 28.0 | 11.0 | 13.6 | -2.6 | |||||||
| 7,1,9-SC2B8H10 | – | 1 | 28.0 | 11.0 | 17.5 | -6.5 | |||||||
| 7,8,9-SC2B8H10 | – | 1 | 1 | 48.2 | 31.2 | 32.9 | -1.7 | ||||||
| 7,8,11-SC2B8H10 | – | 2 | 62.4 | 45.4 | 48.8 | -3.4 |
aExperimentally known isomers
bOnly metal derivatives are experimentally known
cStrong candidates
Fig. 5Most stable thia(carba)borane and -borate isomers. White, black and pink balls represent boron, carbon and sulfur atoms, respectively. AA, BA, DA–GA are experimentally known. Metal complexes of CA are also experimentally known
Estimated energy penalties (Einc′), estimated relative energies (Eincrel′) for phosphathiaboranes. DFT computed relative energies are also reported for HA to HD. All values are in kcal mol−1
| Compound | μ- | P(H) | PR | S(H)′ | PS′ | PRS′ | ∑ | Δ | |||
|---|---|---|---|---|---|---|---|---|---|---|---|
| 2.2 | 13.3 | 6.1 | 21.4 | 38.8 | |||||||
| 7,9-PSB9H10 | 10,11 | 1 | 1 | 8.3 | 0.0 | 0.0 | 0.0 | ||||
| 7,9-(HP)SB9H10 | 1 | 13.3 | 5.0 | 3.4 | 1.6 | ||||||
| 7,8-PSB9H10 | 10,11 | 1 | 1 | 23.6 | 15.3 | 13.8 | 1.5 | ||||
| 7,8-(HP)SB9H10 | 1 | 1 | 52.1 | 43.8 | 42.2 | 1.6 | |||||
| 7,9-PSB9H9− | 0.0 | 0.0 | 0.0 | 0.0 | |||||||
| 7,8-PSB9H9− | 1 | 21.4 | 21.4 | 21.4 | 0.0 |
aStrong candidate for synthesis
b7-Ph–HB, i.e., 7-Ph derivative of 7,9-PSB9H10 is experimentally known
Estimated energy penalties (Einc′), estimated relative energies (Eincrel′) for selenaboranes and -borates. DFT computed relative energies are also reported for some structures. All values are in kcal mol−1
| Compound | μ- | Se5k(1)′ | Se5k(2)′ | Se(H)′ | SeSe′ | ∑ | Δ | |||
|---|---|---|---|---|---|---|---|---|---|---|
| 48.2 | 40.7 | 6.1 | 35.1 | |||||||
| 7-SeB10H12 | 8,9; 10,11 | 2 | 12.2 | 0.0 | 0.0 | 0.0 | ||||
| 2-SeB10H12 | 7,8; 9,10 | 1 | 1 | 46.8 | 34.6 | 39.5 | -4.9 | |||
| 7-SeB10H111− | 9,10 | 0.0 | 0.0 | 0.0 | 0.0 | |||||
| 7-SeB10H111− | 8,9 | 1 | 6.1 | 6.1 | 6.1 | 0.0 | ||||
| 1-SeB10H111− | 7,8 | 1 | 48.2 | 48.2 | 52.6 | -4.4 | ||||
| 7-SeB10H102− | 0.0 | 0.0 | 0.0 | 0.0 | ||||||
| 2-SeB10H102− | 1 | 40.7 | 40.7 | 40.7 | 0.0 | |||||
| 7,9-Se2B9H9 | 0.0 | 0.0 | 0.0 | 0.0 | ||||||
| 7,8-Se2B9H9 | 1 | 35.1 | 35.1 | 35.1 | 0.0 |
aExperimentally known isomers
bCyclopentadienyl metal derivatives are experimentally known
Estimated energy penalties (Einc′), estimated relative energies (Eincrel′) for selenacarbaboranes and -borates. DFT computed relative energies are also reported for some structures. All values are in kcal mol−1
| Compound | μ- | C5k | C(H) | CC | Se5k(1)′ | Se5k(2)′ | Se(H)′ | SeC′ | ∑ | Δ | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.0 | 2.1 | 17.0 | 48.2 | 40.7 | 6.1 | 30.3 | |||||||
| 7,9-SeCB9H11 | 10,11 | 1 | 1 | 8.2 | 0.0 | 0.0 | 0.0 | ||||||
| 7,8-SeCB9H11 | 9,10 | 1 | 1 | 32.4 | 24.2 | 24.8 | -0.6 | ||||||
| 7,8-SeCB9H11 | 10,11 | 1 | 1 | 36.4 | 28.2 | 26.5 | 1.7 | ||||||
| 1,7-SeCB9H11 | 9,10 | 1 | 1 | 42.8 | 34.6 | 32.8 | 1.8 | ||||||
| 1,7-SeCB9H11 | 8,9 | 1 | 1 | 50.3 | 42.1 | 46.7 | -4.6 | ||||||
| 2,4-SeCB9H11 | 9,10 | 1 | 1 | 1 | 70.8 | 62.6 | 65.0 | -2.4 | |||||
| 7,9-SeCB9H10− | 0.0 | 0.0 | 0.0 | 0.0 | |||||||||
| 7,8-SeCB9H10− | 1 | 30.3 | 30.3 | 30.3 | 0.0 | ||||||||
| 7,1-SeCB9H10− | 1 | 28.0 | 28.0 | 32.6 | -4.6 | ||||||||
| 7,9,10-SeC2B8H10 | 1 | 17.0 | 0.0 | 0.0 | 0.0 | ||||||||
| 7,8,10-SeC2B8H10 | 1 | 30.3 | 13.3 | 2.5 | 9.8 | ||||||||
| 7,1,9-SeC2B8H10 | 1 | 28.0 | 11.0 | 7.6 | 3.4 | ||||||||
| 7,8,9-SeC2B8H10 | 1 | 1 | 47.3 | 30.3 | 22.5 | 8.8 | |||||||
| 7,8,11-SeC2B8H10 | 2 | 60.6 | 42.6 | 37.4 | 5.2 |
aStrong candidate
b7-Cycloheanamine derivative is experimentally known
cExperimentally known isomer
Estimated energy penalties (Einc′), estimated relative energies (Eincrel′) for selenathiaboranes. All values are in kcal mol−1
| Compound | Δ | Structural feature | |||
|---|---|---|---|---|---|
| 7,9-SeSB9H9 | 0.0 | 0.0 | 0.0 | None | |
| 7,8-SeSB9H9 | 40.2 | 40.2 | 0.0 | SSe′ | |
| 2,9-SeSB9H9 | 40.7 | 36.0 | 4.7 | Se5k(2)′ | |
| 9,2-SeSB9H9 | 43.8 | 38.3 | 5.5 | S5k(2)′ | |
| 1,7-SeSB9H9 | 48.1 | 51.9 | −3.8 | Se5k(1)′ | |
| 7,1-SeSB9H9 | 52.2 | 54.7 | −2.5 | S5k(1)′ |
Estimated relative energies (kcal mol−1) of 7,9,10-, 7,8,10-, 7,8,9- and 7,8,11-isomers in [HetC2B8H10](4−n)-a,b
aHet may be a three- or four-electron-donating heteroatom. n corresponds to the number of electrons donated by a given heteroatom
bB3LYP/6-311+G(d,p)//B3LYP/6-31G(d)+ZPE computed relative stabilities of various [HetC2B8H10](4-n)- isomers are listed in parenthesis for various heteroatoms. These values are usually very close to the values predicted by estimated energy penalties
c7,9,10-[NC2B8H10]−, 7,9,10-(HN)C2B8H10, 7,9,10-SC2B8H10, 7,9,10-SeC2B8H10 are experimentally known
d7,8,10-SC2B8H10 is experimentally known
e7,8,9-[NC2B8H10]− and 7-Me and 7-Ph derivatives of 7,8,9-(HP)C2B8H10 are experimentally known
f7-Ph derivatives of 7,8,11-(HP)C2B8H10 is experimentally known