Literature DB >> 16257567

Electrostatics in computational protein design.

Christina L Vizcarra1, Stephen L Mayo.   

Abstract

Catalytic activity and protein-protein recognition have proven to be significant challenges for computational protein design. Electrostatic interactions are crucial for these and other protein functions, and therefore accurate modeling of electrostatics is necessary for successfully advancing protein design into the realm of protein function. This review focuses on recent progress in modeling electrostatic interactions in computational protein design, with particular emphasis on continuum models.

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Year:  2005        PMID: 16257567     DOI: 10.1016/j.cbpa.2005.10.014

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  35 in total

1.  Improving computational protein design by using structure-derived sequence profile.

Authors:  Liang Dai; Yuedong Yang; Hyung Rae Kim; Yaoqi Zhou
Journal:  Proteins       Date:  2010-08-01

2.  Polarizable Atomic Multipole Solutes in a Generalized Kirkwood Continuum.

Authors:  Michael J Schnieders; Jay W Ponder
Journal:  J Chem Theory Comput       Date:  2007-11       Impact factor: 6.006

Review 3.  Computational tools for epitope vaccine design and evaluation.

Authors:  Linling He; Jiang Zhu
Journal:  Curr Opin Virol       Date:  2015-03-31       Impact factor: 7.090

4.  A Consensus Data Mining secondary structure prediction by combining GOR V and Fragment Database Mining.

Authors:  Taner Z Sen; Haitao Cheng; Andrzej Kloczkowski; Robert L Jernigan
Journal:  Protein Sci       Date:  2006-09-25       Impact factor: 6.725

5.  Combinatorial methods for small-molecule placement in computational enzyme design.

Authors:  Jonathan Kyle Lassila; Heidi K Privett; Benjamin D Allen; Stephen L Mayo
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-30       Impact factor: 11.205

6.  Computationally mapping sequence space to understand evolutionary protein engineering.

Authors:  Kathryn A Armstrong; Bruce Tidor
Journal:  Biotechnol Prog       Date:  2007-11-17

7.  Solvent reaction field potential inside an uncharged globular protein: a bridge between implicit and explicit solvent models?

Authors:  David S Cerutti; Nathan A Baker; J Andrew McCammon
Journal:  J Chem Phys       Date:  2007-10-21       Impact factor: 3.488

Review 8.  Progress in computational protein design.

Authors:  Shaun M Lippow; Bruce Tidor
Journal:  Curr Opin Biotechnol       Date:  2007-07-20       Impact factor: 9.740

9.  Solvent accessible surface area approximations for rapid and accurate protein structure prediction.

Authors:  Elizabeth Durham; Brent Dorr; Nils Woetzel; René Staritzbichler; Jens Meiler
Journal:  J Mol Model       Date:  2009-02-21       Impact factor: 1.810

Review 10.  Energy functions in de novo protein design: current challenges and future prospects.

Authors:  Zhixiu Li; Yuedong Yang; Jian Zhan; Liang Dai; Yaoqi Zhou
Journal:  Annu Rev Biophys       Date:  2013-02-28       Impact factor: 12.981

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