Literature DB >> 16257380

The impact of Life Science Identifier on informatics data.

Sean Martin1, Moses M Hohman, Ted Liefeld.   

Abstract

Since the Life Science Identifier (LSID) data identification and access standard made its official debut in late 2004, several organizations have begun to use LSIDs to simplify the methods used to uniquely name, reference and retrieve distributed data objects and concepts. In this review, the authors build on introductory work that describes the LSID standard by documenting how five early adopters have incorporated the standard into their technology infrastructure and by outlining several common misconceptions and difficulties related to LSID use, including the impact of the byte identity requirement for LSID-identified objects and the opacity recommendation for use of the LSID syntax. The review describes several shortcomings of the LSID standard, such as the lack of a specific metadata standard, along with solutions that could be addressed in future revisions of the specification.

Mesh:

Year:  2005        PMID: 16257380     DOI: 10.1016/S1359-6446(05)03651-2

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  11 in total

1.  The NIF LinkOut broker: a web resource to facilitate federated data integration using NCBI identifiers.

Authors:  Luis Marenco; Giorgio A Ascoli; Maryann E Martone; Gordon M Shepherd; Perry L Miller
Journal:  Neuroinformatics       Date:  2008-10-31

2.  Current trends and new challenges of databases and web applications for systems driven biological research.

Authors:  Pradeep Kumar Sreenivasaiah; Do Han Kim
Journal:  Front Physiol       Date:  2010-12-03       Impact factor: 4.566

3.  Identifying and relating biological concepts in the Catalogue of Life.

Authors:  Andrew C Jones; Richard J White; Ewen R Orme
Journal:  J Biomed Semantics       Date:  2011-10-17

4.  LSID Tester, a tool for testing Life Science Identifier resolution services.

Authors:  Roderic Dm Page
Journal:  Source Code Biol Med       Date:  2008-02-18

5.  Surfacing the deep data of taxonomy.

Authors:  Roderic D M Page
Journal:  Zookeys       Date:  2016-01-07       Impact factor: 1.546

6.  bioGUID: resolving, discovering, and minting identifiers for biodiversity informatics.

Authors:  Roderic D M Page
Journal:  BMC Bioinformatics       Date:  2009-11-10       Impact factor: 3.169

7.  Advancing cancer systems biology: introducing the Center for the Development of a Virtual Tumor, CViT.

Authors:  Thomas S Deisboeck; Le Zhang; Sean Martin
Journal:  Cancer Inform       Date:  2007-03-30

8.  GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations.

Authors:  Qingwei Xu; Yixiang Shi; Qiang Lu; Guoqing Zhang; Qingming Luo; Yixue Li
Journal:  BMC Bioinformatics       Date:  2008       Impact factor: 3.169

9.  BioNames: linking taxonomy, texts, and trees.

Authors:  Roderic D M Page
Journal:  PeerJ       Date:  2013-10-29       Impact factor: 2.984

10.  The BiSciCol Triplifier: bringing biodiversity data to the Semantic Web.

Authors:  Brian J Stucky; John Deck; Tom Conlin; Lukasz Ziemba; Nico Cellinese; Robert Guralnick
Journal:  BMC Bioinformatics       Date:  2014-07-29       Impact factor: 3.169

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