Literature DB >> 16256143

Multifractality in intracellular enzymatic reactions.

Juan S Aranda1, Edgar Salgado, Alejandro Muñoz-Diosdado.   

Abstract

Enzymatic kinetics adjust well to the Michaelis-Menten paradigm in homogeneous media with dilute, perfectly mixed reactants. These conditions are quite different from the highly structured cell plasm, so applications of the classic kinetics theory to this environment are rather limited. Cytoplasmic structure produces molecular crowding and anomalous diffusion of substances, modifying the mass action kinetic laws. The reaction coefficients are no longer constant but time-variant, as stated in the fractal kinetics theory. Fractal kinetics assumes that enzymatic reactions on such heterogeneous media occur within a non-Euclidian space characterized by a certain fractal dimension, this fractal dimension gives the dependence on time of the kinetic coefficients. In this work, stochastic simulations of enzymatic reactions under molecular crowding have been completed, and kinetic coefficients for the reactions, including the Michaelis-Menten parameter KM, were calculated. The simulations results led us to confirm the time dependence of michaelian kinetic parameter for the enzymatic catalysis. Besides, other chaos related phenomena were pointed out from the obtained KM time series, such as the emergence of strange attractors and multifractality.

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Year:  2005        PMID: 16256143     DOI: 10.1016/j.jtbi.2005.09.005

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  6 in total

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3.  Fractal michaelis-menten kinetics under steady state conditions: Application to mibefradil.

Authors:  Rebeccah E Marsh; Jack A Tuszyński
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4.  Reflections on the theory of "silver bullet" octreotide tracers: implications for ligand-receptor interactions in the age of peptides, heterodimers, receptor mosaics, truncated receptors, and multifractal analysis.

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Journal:  EJNMMI Res       Date:  2011-07-26       Impact factor: 3.138

5.  Crowding Effects of Polystyrene Nanoparticles on Lactate Dehydrogenase Activity in Hydra Attenuata.

Authors:  Joelle Auclair; François Gagné
Journal:  J Xenobiot       Date:  2020-09-16

6.  A Lattice-Boltzmann scheme for the simulation of diffusion in intracellular crowded systems.

Authors:  Liliana Angeles-Martinez; Constantinos Theodoropoulos
Journal:  BMC Bioinformatics       Date:  2015-11-03       Impact factor: 3.169

  6 in total

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