Literature DB >> 16245948

Redox and spectroscopic properties of human indoleamine 2,3-dioxygenase and a His303Ala variant: implications for catalysis.

Nektaria D Papadopoulou1, Martin Mewies, Kirsty J McLean, Harriet E Seward, Dimitri A Svistunenko, Andrew W Munro, Emma Lloyd Raven.   

Abstract

Indoleamine 2,3-dioxygenase is an important mammalian target that catalyses the oxidative cleavage of l-tryptophan to N-formylkynurenine. In this work, the redox properties of recombinant human indoleamine 2,3-dioxygenase (rhIDO) and its H303A variant have been examined for the first time and the spectroscopic and substrate-binding properties of rhIDO and H303A in the presence and absence of substrate are reported. The Fe(3+)/Fe(2+) reduction potential of H303A was found to be -30 +/- 4 mV; in the presence of l-Trp, this value increases to +16 +/- 3 mV. A variety of spectroscopies indicate that ferric rhIDO at pH 6.6 exists as a mixture of six-coordinate, high-spin, water-bound heme and a low-spin species that contains a second nitrogenous ligand; parallel experiments on H303A are consistent either with His303 as the sixth ligand or with His303 linked to a conformational change that affects this transition. There is an increase in the low-spin component at alkaline pH for rhIDO, but this is not due to hydroxide-bound heme. Substrate binding induces a conformational rearrangement and formation of low-spin, hydroxide-bound heme; analysis of the H303A variant indicates that His303 is not required for this conversion and is not essential for substrate binding. The Fe(3+)/Fe(2+) reduction potential of H303A variant is approximately 70 mV lower than that of rhIDO, leading to a destabilization of the ferrous-oxy complex, which is an obligate intermediate in the catalytic process. In comparison with the properties of other heme enzymes, the data can be used to build a more detailed picture of substrate binding and catalysis in indoleamine 2,3-dioxygenase. The wider implications of these results are discussed in the context of our current understanding of the catalytic mechanism of the enzyme.

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Year:  2005        PMID: 16245948     DOI: 10.1021/bi0513958

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  29 in total

1.  Enzyme reactivation by hydrogen peroxide in heme-based tryptophan dioxygenase.

Authors:  Rong Fu; Rupal Gupta; Jiafeng Geng; Kednerlin Dornevil; Siming Wang; Yong Zhang; Michael P Hendrich; Aimin Liu
Journal:  J Biol Chem       Date:  2011-06-01       Impact factor: 5.157

2.  Spectroscopic studies of ligand and substrate binding to human indoleamine 2,3-dioxygenase.

Authors:  Changyuan Lu; Yu Lin; Syun-Ru Yeh
Journal:  Biochemistry       Date:  2010-06-22       Impact factor: 3.162

3.  NADH oxidase activity of indoleamine 2,3-dioxygenase.

Authors:  Federico I Rosell; Hsin H Kuo; A Grant Mauk
Journal:  J Biol Chem       Date:  2011-06-20       Impact factor: 5.157

4.  Ligand migration in human indoleamine-2,3 dioxygenase.

Authors:  Karin Nienhaus; Elena Nickel; Changyuan Lu; Syun-Ru Yeh; G Ulrich Nienhaus
Journal:  IUBMB Life       Date:  2011-03       Impact factor: 3.885

5.  Molecular insights into substrate recognition and catalysis by tryptophan 2,3-dioxygenase.

Authors:  Farhad Forouhar; J L Ross Anderson; Christopher G Mowat; Sergey M Vorobiev; Arif Hussain; Mariam Abashidze; Chiara Bruckmann; Sarah J Thackray; Jayaraman Seetharaman; Todd Tucker; Rong Xiao; Li-Chung Ma; Li Zhao; Thomas B Acton; Gaetano T Montelione; Stephen K Chapman; Liang Tong
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-29       Impact factor: 11.205

6.  Probing the ternary complexes of indoleamine and tryptophan 2,3-dioxygenases by cryoreduction EPR and ENDOR spectroscopy.

Authors:  Roman M Davydov; Nishma Chauhan; Sarah J Thackray; J L Ross Anderson; Nektaria D Papadopoulou; Christopher G Mowat; Stephen K Chapman; Emma L Raven; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2010-04-21       Impact factor: 15.419

7.  Ligand and substrate migration in human indoleamine 2,3-dioxygenase.

Authors:  Elena Nickel; Karin Nienhaus; Changyuan Lu; Syun-Ru Yeh; G Ulrich Nienhaus
Journal:  J Biol Chem       Date:  2009-09-20       Impact factor: 5.157

8.  Human indoleamine 2,3-dioxygenase is a catalyst of physiological heme peroxidase reactions: implications for the inhibition of dioxygenase activity by hydrogen peroxide.

Authors:  Mohammed Freewan; Martin D Rees; Tito S Sempértegui Plaza; Elias Glaros; Yean J Lim; Xiao Suo Wang; Amanda W S Yeung; Paul K Witting; Andrew C Terentis; Shane R Thomas
Journal:  J Biol Chem       Date:  2012-12-03       Impact factor: 5.157

9.  The second enzyme in pyrrolnitrin biosynthetic pathway is related to the heme-dependent dioxygenase superfamily.

Authors:  Walter De Laurentis; Leang Khim; J L Ross Anderson; Ariane Adam; Kenneth A Johnson; Robert S Phillips; Stephen K Chapman; Karl-Heinz van Pee; James H Naismith
Journal:  Biochemistry       Date:  2007-10-09       Impact factor: 3.162

10.  Evolution of vertebrate indoleamine 2,3-dioxygenases.

Authors:  Hajime Julie Yuasa; Miwa Takubo; Ayumi Takahashi; Tetsuo Hasegawa; Hiroshi Noma; Tomohiko Suzuki
Journal:  J Mol Evol       Date:  2007-11-17       Impact factor: 2.395

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