Literature DB >> 16241694

Direct observation of azimuthal correlations between DNA in hydrated aggregates.

Alexei A Kornyshev1, Dominic J Lee, Sergey Leikin, Aaron Wynveen, Steven B Zimmerman.   

Abstract

This study revisits the classical x-ray diffraction patterns from hydrated, noncrystalline fibers originally used to establish the helical structure of DNA. We argue that changes in these diffraction patterns with DNA packing density reveal strong azimuthally dependent interactions between adjacent molecules up to approximately 40 A interaxial or approximately 20 A surface-to-surface separations. These interactions appear to force significant torsional "straightening" of DNA and strong azimuthal alignment of nearest neighbor molecules. The results are in good agreement with the predictions of recent theoretical models relating DNA-DNA interactions to the helical symmetry of their surface charge patterns.

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Year:  2005        PMID: 16241694     DOI: 10.1103/PhysRevLett.95.148102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  8 in total

1.  Correlation effects, image charge effects and finite size in the macro-ion-electrolyte system: a field-theoretic approach.

Authors:  D J Lee
Journal:  Eur Phys J E Soft Matter       Date:  2009-05-01       Impact factor: 1.890

2.  Local structure of DNA toroids reveals curvature-dependent intermolecular forces.

Authors:  Luca Barberi; Françoise Livolant; Amélie Leforestier; Martin Lenz
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

3.  Undulations enhance the effect of helical structure on DNA interactions.

Authors:  D J Lee; A Wynveen; A A Kornyshev; S Leikin
Journal:  J Phys Chem B       Date:  2010-09-09       Impact factor: 2.991

4.  Symmetry of electrostatic interaction between pyrophosphate DNA molecules.

Authors:  V L Golo; E I Kats; S A Kuznetsova; Yu S Volkov
Journal:  Eur Phys J E Soft Matter       Date:  2010-01-20       Impact factor: 1.890

5.  Differential stability of DNA crossovers in solution mediated by divalent cations.

Authors:  Péter Várnai; Youri Timsit
Journal:  Nucleic Acids Res       Date:  2010-03-09       Impact factor: 16.971

6.  Signatures of DNA flexibility, interactions and sequence-related structural variations in classical X-ray diffraction patterns.

Authors:  A A Kornyshev; D J Lee; A Wynveen; S Leikin
Journal:  Nucleic Acids Res       Date:  2011-05-18       Impact factor: 16.971

7.  Helical coherence of DNA in crystals and solution.

Authors:  Aaron Wynveen; Dominic J Lee; Alexei A Kornyshev; Sergey Leikin
Journal:  Nucleic Acids Res       Date:  2008-08-28       Impact factor: 16.971

8.  Evidence of protein-free homology recognition in magnetic bead force-extension experiments.

Authors:  D J O' Lee; C Danilowicz; C Rochester; A A Kornyshev; M Prentiss
Journal:  Proc Math Phys Eng Sci       Date:  2016-07       Impact factor: 2.704

  8 in total

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