Literature DB >> 16241377

Guided simulated annealing method for optimization problems.

C I Chou1, R S Han, S P Li, Ting-Kuo Lee.   

Abstract

Incorporating the concept of order parameter of the mean-field theory into the simulated annealing method, we present an optimization algorithm, the guided simulated annealing method. In this method mean-field order parameters are calculated to guide the configuration search for the global minimum. Allowing fluctuations and improvement of mean-field values iteratively, this method successfully identifies global minima for several difficult optimization problems. Application of this method to the HP lattice-protein model has found another lowest-energy state for an N=100 sequence that was not found by other methods before. Results for spin glass models are also presented which show improvement over the previous results.

Year:  2003        PMID: 16241377     DOI: 10.1103/PhysRevE.67.066704

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  3 in total

1.  Inference of gene regulatory networks using time-series data: a survey.

Authors:  Chao Sima; Jianping Hua; Sungwon Jung
Journal:  Curr Genomics       Date:  2009-09       Impact factor: 2.236

2.  A branch and bound algorithm for the protein folding problem in the HP lattice model.

Authors:  Mao Chen; Wen Qi Huang
Journal:  Genomics Proteomics Bioinformatics       Date:  2005-11       Impact factor: 7.691

3.  On the characterization and software implementation of general protein lattice models.

Authors:  Alessio Bechini
Journal:  PLoS One       Date:  2013-03-29       Impact factor: 3.240

  3 in total

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