Literature DB >> 16238370

MMM1D: a method for calculating electrostatic interactions in one-dimensional periodic geometries.

Axel Arnold1, Christian Holm.   

Abstract

We present a new method to accurately calculate the electrostatic energy and forces on charges in a system with periodic boundary conditions in one of three spatial dimensions. We transform the Coulomb sum via a convergence factor into a series of fast decaying functions similar to the Lekner method. Rigorous error bounds for the energies and the forces are derived and numerically verified. The method has a computational complexity of O(N(2)), but is faster and easier to use than previously reported methods.

Entities:  

Year:  2005        PMID: 16238370     DOI: 10.1063/1.2052647

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Monte carlo simulations of tau proteins: effect of phosphorylation.

Authors:  Y S Jho; E B Zhulina; M W Kim; P A Pincus
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

2.  Interactions of like-charged rods at low temperatures: analytical theory vs. simulations.

Authors:  A Arnold; C Holm
Journal:  Eur Phys J E Soft Matter       Date:  2008-09       Impact factor: 1.890

3.  Role of geometrical shape in like-charge attraction of DNA.

Authors:  Michael Kuron; Axel Arnold
Journal:  Eur Phys J E Soft Matter       Date:  2015-03-27       Impact factor: 1.890

4.  Electrophoretic mobilities of counterions and a polymer in cylindrical pores.

Authors:  Sunil P Singh; M Muthukumar
Journal:  J Chem Phys       Date:  2014-09-21       Impact factor: 3.488

  4 in total

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