Literature DB >> 16235556

MethylMapper: a method for high-throughput, multilocus bisulfite sequence analysis and reporting.

Jared M Ordway1, Joseph A Bedell, Robert W Citek, Andrew N Nunberg, Jeffrey A Jeddeloh.   

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Year:  2005        PMID： 16235556     DOI： 10.2144/000112035

Source DB:  PubMed          Journal:  Biotechniques        ISSN： 0736-6205            Impact factor:   1.993


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  6 in total

1.  Optimized design and data analysis of tag-based cytosine methylation assays.

Authors:  Masako Suzuki; Qiang Jing; Daniel Lia; Marién Pascual; Andrew McLellan; John M Greally
Journal:  Genome Biol       Date:  2010-04-01       Impact factor: 13.583

2.  Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA.

Authors:  Yulia Korshunova; Rebecca K Maloney; Nathan Lakey; Robert W Citek; Blaire Bacher; Arief Budiman; Jared M Ordway; W Richard McCombie; Jorge Leon; Jeffrey A Jeddeloh; John D McPherson
Journal:  Genome Res       Date:  2007-11-21       Impact factor: 9.043

3.  MethylViewer: computational analysis and editing for bisulfite sequencing and methyltransferase accessibility protocol for individual templates (MAPit) projects.

Authors:  Carolina E Pardo; Ian M Carr; Christopher J Hoffman; Russell P Darst; Alexander F Markham; David T Bonthron; Michael P Kladde
Journal:  Nucleic Acids Res       Date:  2010-10-19       Impact factor: 16.971

4.  Identification of novel high-frequency DNA methylation changes in breast cancer.

Authors:  Jared M Ordway; Muhammad A Budiman; Yulia Korshunova; Rebecca K Maloney; Joseph A Bedell; Robert W Citek; Blaire Bacher; Seth Peterson; Tracy Rohlfing; Jacqueline Hall; Robert Brown; Nathan Lakey; Rebecca W Doerge; Robert A Martienssen; Jorge Leon; John D McPherson; Jeffrey A Jeddeloh
Journal:  PLoS One       Date:  2007-12-19       Impact factor: 3.240

5.  Promoter targeted small RNAs induce long-term transcriptional gene silencing in human cells.

Authors:  Peter G Hawkins; Sharon Santoso; Christopher Adams; Vasiliki Anest; Kevin V Morris
Journal:  Nucleic Acids Res       Date:  2009-03-20       Impact factor: 16.971

6.  QUMA: quantification tool for methylation analysis.

Authors:  Yuichi Kumaki; Masaaki Oda; Masaki Okano
Journal:  Nucleic Acids Res       Date:  2008-05-16       Impact factor: 16.971
  6 in total

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