Literature DB >> 16231959

The role of informatics in the coordinated management of biological resources collections.

Paolo Romano1, Manfred Kracht, Maria Assunta Manniello, Gerrit Stegehuis, Dagmar Fritze.   

Abstract

The term 'biological resources' is applied to the living biological material collected, held and catalogued in culture collections: bacterial and fungal cultures; animal, human and plant cells; viruses; and isolated genetic material. A wealth of information on these materials has been accumulated in culture collections, and most of this information is accessible. Digitalisation of data has reached a high level; however, information is still dispersed. Individual and coordinated approaches have been initiated to improve accessibility of biological resource centres, their holdings and related information through the Internet. These approaches cover subjects such as standardisation of data handling and data accessibility, and standardisation and quality control of laboratory procedures. This article reviews some of the most important initiatives implemented so far, as well as the most recent achievements. It also discusses the possible improvements that could be achieved by adopting new communication standards and technologies, such as web services, in view of a deeper and more fruitful integration of biological resources information in the bioinformatics network environment.

Entities:  

Mesh:

Year:  2005        PMID: 16231959     DOI: 10.2165/00822942-200594030-00002

Source DB:  PubMed          Journal:  Appl Bioinformatics        ISSN: 1175-5636


  5 in total

1.  IBWS: IST Bioinformatics Web Services.

Authors:  Achille Zappa; Mariangela Miele; Paolo Romano
Journal:  Nucleic Acids Res       Date:  2010-05-19       Impact factor: 16.971

2.  Biowep: a workflow enactment portal for bioinformatics applications.

Authors:  Paolo Romano; Ezio Bartocci; Guglielmo Bertolini; Flavio De Paoli; Domenico Marra; Giancarlo Mauri; Emanuela Merelli; Luciano Milanesi
Journal:  BMC Bioinformatics       Date:  2007-03-08       Impact factor: 3.169

3.  Improving interoperability between microbial information and sequence databases.

Authors:  Paolo Romano; Peter Dawyndt; Francesca Piersigilli; Jean Swings
Journal:  BMC Bioinformatics       Date:  2005-12-01       Impact factor: 3.169

Review 4.  An Information System for European culture collections: the way forward.

Authors:  Serge Casaregola; Alexander Vasilenko; Paolo Romano; Vincent Robert; Svetlana Ozerskaya; Anna Kopf; Frank O Glöckner; David Smith
Journal:  Springerplus       Date:  2016-06-17

5.  Data recovery and integration from public databases uncovers transformation-specific transcriptional downregulation of cAMP-PKA pathway-encoding genes.

Authors:  Chiara Balestrieri; Lilia Alberghina; Marco Vanoni; Ferdinando Chiaradonna
Journal:  BMC Bioinformatics       Date:  2009-10-15       Impact factor: 3.169

  5 in total

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