Literature DB >> 16230612

Application of a priori established gene sets to discover biologically important differential expression in microarray data.

Andrea Bild1, Phillip George Febbo.   

Abstract

Mesh:

Year:  2005        PMID: 16230612      PMCID: PMC1266131          DOI: 10.1073/pnas.0507477102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


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  18 in total

1.  Support vector machine classification and validation of cancer tissue samples using microarray expression data.

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2.  Significance analysis of microarrays applied to the ionizing radiation response.

Authors:  V G Tusher; R Tibshirani; G Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-17       Impact factor: 11.205

3.  Genome-wide discovery of transcriptional modules from DNA sequence and gene expression.

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4.  PGC-1alpha at the crossroads of type 2 diabetes.

Authors:  Alan D Attie; Christina M Kendziorski
Journal:  Nat Genet       Date:  2003-07       Impact factor: 38.330

5.  A gene expression-based method to diagnose clinically distinct subgroups of diffuse large B cell lymphoma.

Authors:  George Wright; Bruce Tan; Andreas Rosenwald; Elaine H Hurt; Adrian Wiestner; Louis M Staudt
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-04       Impact factor: 11.205

6.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

7.  alpha-Methylacyl coenzyme A racemase as a tissue biomarker for prostate cancer.

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8.  Distinct gene expression phenotypes of cells lacking Rb and Rb family members.

Authors:  Esther P Black; Erich Huang; Holly Dressman; Rachel Rempel; Nina Laakso; Sylvia L Asa; Seiichi Ishida; Mike West; Joseph R Nevins
Journal:  Cancer Res       Date:  2003-07-01       Impact factor: 12.701

9.  mTOR inhibition reverses Akt-dependent prostate intraepithelial neoplasia through regulation of apoptotic and HIF-1-dependent pathways.

Authors:  Pradip K Majumder; Phillip G Febbo; Rachel Bikoff; Raanan Berger; Qi Xue; Louis M McMahon; Judith Manola; James Brugarolas; Timothy J McDonnell; Todd R Golub; Massimo Loda; Heidi A Lane; William R Sellers
Journal:  Nat Med       Date:  2004-05-23       Impact factor: 53.440

10.  PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes.

Authors:  Vamsi K Mootha; Cecilia M Lindgren; Karl-Fredrik Eriksson; Aravind Subramanian; Smita Sihag; Joseph Lehar; Pere Puigserver; Emma Carlsson; Martin Ridderstråle; Esa Laurila; Nicholas Houstis; Mark J Daly; Nick Patterson; Jill P Mesirov; Todd R Golub; Pablo Tamayo; Bruce Spiegelman; Eric S Lander; Joel N Hirschhorn; David Altshuler; Leif C Groop
Journal:  Nat Genet       Date:  2003-07       Impact factor: 38.330

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  22 in total

1.  Kinase suppressor of ras 1 (KSR1) regulates PGC1α and estrogen-related receptor α to promote oncogenic Ras-dependent anchorage-independent growth.

Authors:  Kurt W Fisher; Binita Das; Robert L Kortum; Oleg V Chaika; Robert E Lewis
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2.  A hypothesis test for equality of bayesian network models.

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Journal:  EURASIP J Bioinform Syst Biol       Date:  2010-10-12

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4.  Latent factor analysis to discover pathway-associated putative segmental aneuploidies in human cancers.

Authors:  Joseph E Lucas; Hsiu-Ni Kung; Jen-Tsan A Chi
Journal:  PLoS Comput Biol       Date:  2010-09-02       Impact factor: 4.475

Review 5.  Current and future directions in genomics of amyotrophic lateral sclerosis.

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6.  Dihydropyrimidine accumulation is required for the epithelial-mesenchymal transition.

Authors:  Yoav D Shaul; Elizaveta Freinkman; William C Comb; Jason R Cantor; Wai Leong Tam; Prathapan Thiru; Dohoon Kim; Naama Kanarek; Michael E Pacold; Walter W Chen; Brian Bierie; Richard Possemato; Ferenc Reinhardt; Robert A Weinberg; Michael B Yaffe; David M Sabatini
Journal:  Cell       Date:  2014-08-28       Impact factor: 41.582

7.  Transcriptomic Analysis Reveals Receptor Subclass-Specific Immune Regulation of CD8+ T Cells by Opioids.

Authors:  Claire Mazahery; Saba Valadkhan; Alan D Levine
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8.  Differentially expressed microRNAs and affected biological pathways revealed by modulated modularity clustering (MMC) analysis of human preeclamptic and IUGR placentas.

Authors:  L Guo; S Q Tsai; N E Hardison; A H James; A A Motsinger-Reif; B Thames; E A Stone; C Deng; J A Piedrahita
Journal:  Placenta       Date:  2013-04-30       Impact factor: 3.481

9.  Module map of stem cell genes guides creation of epithelial cancer stem cells.

Authors:  David J Wong; Helen Liu; Todd W Ridky; David Cassarino; Eran Segal; Howard Y Chang
Journal:  Cell Stem Cell       Date:  2008-04-10       Impact factor: 24.633

10.  Knowledge driven decomposition of tumor expression profiles.

Authors:  Martin H van Vliet; Lodewyk F A Wessels; Marcel J T Reinders
Journal:  BMC Bioinformatics       Date:  2009-01-30       Impact factor: 3.169

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