Literature DB >> 16230530

Surfing with the tunicates into the post-genome era.

Nori Satoh1, Mike Levine.   

Abstract

This year is the centenary of Edward G. Conklin's signal findings in embryology: the elucidation of complete cell lineages and the discovery of localized maternal determinants. Conklin used ascidian embryos to elucidate universal principles in embryology. A century later, ascidians, or sea squirts, have not only entered the post-genome era, but in many ways are leading the way to the promise of a "systems-level" understanding of complex processes such as notochord formation, neurogenesis, and even behavior.

Mesh:

Year:  2005        PMID: 16230530      PMCID: PMC1257394          DOI: 10.1101/gad.1365805

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  19 in total

1.  Miniature genome in the marine chordate Oikopleura dioica.

Authors:  H C Seo; M Kube; R B Edvardsen; M F Jensen; A Beck; E Spriet; G Gorsky; E M Thompson; H Lehrach; R Reinhardt; D Chourrout
Journal:  Science       Date:  2001-12-21       Impact factor: 47.728

2.  The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.

Authors:  Paramvir Dehal; Yutaka Satou; Robert K Campbell; Jarrod Chapman; Bernard Degnan; Anthony De Tomaso; Brad Davidson; Anna Di Gregorio; Maarten Gelpke; David M Goodstein; Naoe Harafuji; Kenneth E M Hastings; Isaac Ho; Kohji Hotta; Wayne Huang; Takeshi Kawashima; Patrick Lemaire; Diego Martinez; Ian A Meinertzhagen; Simona Necula; Masaru Nonaka; Nik Putnam; Sam Rash; Hidetoshi Saiga; Masanobu Satake; Astrid Terry; Lixy Yamada; Hong-Gang Wang; Satoko Awazu; Kaoru Azumi; Jeffrey Boore; Margherita Branno; Stephen Chin-Bow; Rosaria DeSantis; Sharon Doyle; Pilar Francino; David N Keys; Shinobu Haga; Hiroko Hayashi; Kyosuke Hino; Kaoru S Imai; Kazuo Inaba; Shungo Kano; Kenji Kobayashi; Mari Kobayashi; Byung-In Lee; Kazuhiro W Makabe; Chitra Manohar; Giorgio Matassi; Monica Medina; Yasuaki Mochizuki; Steve Mount; Tomomi Morishita; Sachiko Miura; Akie Nakayama; Satoko Nishizaka; Hisayo Nomoto; Fumiko Ohta; Kazuko Oishi; Isidore Rigoutsos; Masako Sano; Akane Sasaki; Yasunori Sasakura; Eiichi Shoguchi; Tadasu Shin-i; Antoinetta Spagnuolo; Didier Stainier; Miho M Suzuki; Olivier Tassy; Naohito Takatori; Miki Tokuoka; Kasumi Yagi; Fumiko Yoshizaki; Shuichi Wada; Cindy Zhang; P Douglas Hyatt; Frank Larimer; Chris Detter; Norman Doggett; Tijana Glavina; Trevor Hawkins; Paul Richardson; Susan Lucas; Yuji Kohara; Michael Levine; Nori Satoh; Daniel S Rokhsar
Journal:  Science       Date:  2002-12-13       Impact factor: 47.728

3.  Morpholino-based gene knockdown screen of novel genes with developmental function in Ciona intestinalis.

Authors:  Lixy Yamada; Eiichi Shoguchi; Shuichi Wada; Kenji Kobayashi; Yasuaki Mochizuki; Yutaka Satou; Nori Satoh
Journal:  Development       Date:  2003-11-19       Impact factor: 6.868

Review 4.  Ciona intestinalis: an emerging model for whole-genome analyses.

Authors:  Nori Satoh; Yutaka Satou; Brad Davidson; Michael Levine
Journal:  Trends Genet       Date:  2003-07       Impact factor: 11.639

5.  Evolutionary origins of the vertebrate heart: Specification of the cardiac lineage in Ciona intestinalis.

Authors:  Brad Davidson; Michael Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-18       Impact factor: 11.205

6.  The ascidian Mesp gene specifies heart precursor cells.

Authors:  Yutaka Satou; Kaoru S Imai; Nori Satoh
Journal:  Development       Date:  2004-04-28       Impact factor: 6.868

7.  Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks.

Authors:  Kaoru S Imai; Kyosuke Hino; Kasumi Yagi; Nori Satoh; Yutaka Satou
Journal:  Development       Date:  2004-07-21       Impact factor: 6.868

8.  Transposon-mediated insertional mutagenesis revealed the functions of animal cellulose synthase in the ascidian Ciona intestinalis.

Authors:  Yasunori Sasakura; Keisuke Nakashima; Satoko Awazu; Terumi Matsuoka; Akie Nakayama; Jun-ichi Azuma; Nori Satoh
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-07       Impact factor: 11.205

9.  A functional cellulose synthase from ascidian epidermis.

Authors:  Ann G Matthysse; Karine Deschet; Melanie Williams; Mazz Marry; Alan R White; William C Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-13       Impact factor: 11.205

10.  (beta)-catenin mediates the specification of endoderm cells in ascidian embryos.

Authors:  K Imai; N Takada; N Satoh; Y Satou
Journal:  Development       Date:  2000-07       Impact factor: 6.868

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  11 in total

1.  Optimized conditions for transgenesis of the ascidian Ciona using square wave electroporation.

Authors:  David A Vierra; Steven Q Irvine
Journal:  Dev Genes Evol       Date:  2012-01-13       Impact factor: 0.900

2.  Cis-regulatory organization of the Pax6 gene in the ascidian Ciona intestinalis.

Authors:  Steven Q Irvine; Vera C Fonseca; Michael A Zompa; Rajee Antony
Journal:  Dev Biol       Date:  2008-02-13       Impact factor: 3.582

3.  A cis-regulatory signature for chordate anterior neuroectodermal genes.

Authors:  Maximilian Haeussler; Yan Jaszczyszyn; Lionel Christiaen; Jean-Stéphane Joly
Journal:  PLoS Genet       Date:  2010-04-15       Impact factor: 5.917

4.  Study of Cis-regulatory Elements in the Ascidian Ciona intestinalis.

Authors:  Steven Q Irvine
Journal:  Curr Genomics       Date:  2013-03       Impact factor: 2.236

5.  The Simple Chordate Ciona intestinalis Has a Reduced Complement of Genes Associated with Fanconi Anemia.

Authors:  Edward C Stanley; Paul A Azzinaro; David A Vierra; Niall G Howlett; Steven Q Irvine
Journal:  Evol Bioinform Online       Date:  2016-06-06       Impact factor: 1.625

6.  Metamorphosis of the invasive ascidian Ciona savignyi: environmental variables and chemical exposure.

Authors:  Patrick L Cahill; Javier Atalah; Andrew I Selwood; Jeanne M Kuhajek
Journal:  PeerJ       Date:  2016-02-25       Impact factor: 2.984

7.  Repertoires of G protein-coupled receptors for Ciona-specific neuropeptides.

Authors:  Akira Shiraishi; Toshimi Okuda; Natsuko Miyasaka; Tomohiro Osugi; Yasushi Okuno; Jun Inoue; Honoo Satake
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-01       Impact factor: 11.205

8.  A Basal chordate model for studies of gut microbial immune interactions.

Authors:  Larry J Dishaw; Jaime A Flores-Torres; M Gail Mueller; Charlotte R Karrer; Diana P Skapura; Daniela Melillo; Ivana Zucchetti; Rosaria De Santis; Maria Rosaria Pinto; Gary W Litman
Journal:  Front Immunol       Date:  2012-05-03       Impact factor: 7.561

9.  Systemic bud induction and retinoic acid signaling underlie whole body regeneration in the urochordate Botrylloides leachi.

Authors:  Yuval Rinkevich; Guy Paz; Baruch Rinkevich; Ram Reshef
Journal:  PLoS Biol       Date:  2007-04       Impact factor: 8.029

Review 10.  Transposon mediated transgenesis in a marine invertebrate chordate: Ciona intestinalis.

Authors:  Yasunori Sasakura; Yuichi Oogai; Terumi Matsuoka; Nori Satoh; Satoko Awazu
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

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