Literature DB >> 16228541

Which side of the pi-macrocycle plane of (bacterio)chlorophylls is favored for binding of the fifth ligand?

Toru Oba1, Hitoshi Tamiaki.   

Abstract

Reported crystallographic data and calculated molecular models indicated that chlorophyll (Chl) a and bacteriochlorophyll (BChl) a tend to bind the fifth ligand on the side of the macrocycle where the C13(2)-(R)-methoxycarbonyl moiety protrudes (denoting the 'back' side). The crystal structures of 34 photosynthetic proteins possessing (B)Chl cofactors revealed that most of Chl a and BChl a (and b) are coordinated by any peptidyl residue (e.g., histydyl-imidazolyl group), peptidyl backbone or water from the 'back' side. Almost all the cofactors that bind a water molecule as the fifth ligand in these proteins have a 'back' configuration. Theoretical model calculations for methyl chlorophyllide a (MeChlid a) and methyl bacteriochlorophyllide a (MeBChlid a) bound to an imidazole molecule indicated that the 'back' side is energetically favored for the ligand binding. These results are consistent with the fact that ethyl chlorophyllide a (EtChlid a) dihydrate crystal consists of the 'back' complex. The modeling also showed that both removal and stereochemical inverse of the C13(2)-methoxycarbonyl group affect the relative stability between the 'back' and 'face' complexes. The effect of the C13(2)-moiety on the choice of the macrocycle side for the ligand binding is discussed in relation to the function of P700.

Entities:  

Year:  2002        PMID: 16228541     DOI: 10.1023/A:1020816128794

Source DB:  PubMed          Journal:  Photosynth Res        ISSN: 0166-8595            Impact factor:   3.573


  33 in total

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Authors:  P Jordan; P Fromme; H T Witt; O Klukas; W Saenger; N Krauss
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2.  Structural basis of the drastically increased initial electron transfer rate in the reaction center from a Rhodopseudomonas viridis mutant described at 2.00-A resolution.

Authors:  C R Lancaster; M V Bibikova; P Sabatino; D Oesterhelt; H Michel
Journal:  J Biol Chem       Date:  2000-12-15       Impact factor: 5.157

3.  Structure of the membrane-bound protein photosynthetic reaction center from Rhodobacter sphaeroides.

Authors:  C H Chang; O el-Kabbani; D Tiede; J Norris; M Schiffer
Journal:  Biochemistry       Date:  1991-06-04       Impact factor: 3.162

4.  Structural basis of light harvesting by carotenoids: peridinin-chlorophyll-protein from Amphidinium carterae.

Authors:  E Hofmann; P M Wrench; F P Sharples; R G Hiller; W Welte; K Diederichs
Journal:  Science       Date:  1996-06-21       Impact factor: 47.728

5.  Structural details of an interaction between cardiolipin and an integral membrane protein.

Authors:  K E McAuley; P K Fyfe; J P Ridge; N W Isaacs; R J Cogdell; M R Jones
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

Review 6.  Structure of photosystem I.

Authors:  P Fromme; P Jordan; N Krauss
Journal:  Biochim Biophys Acta       Date:  2001-10-30

7.  Crystallographic analyses of site-directed mutants of the photosynthetic reaction center from Rhodobacter sphaeroides.

Authors:  A J Chirino; E J Lous; M Huber; J P Allen; C C Schenck; M L Paddock; G Feher; D C Rees
Journal:  Biochemistry       Date:  1994-04-19       Impact factor: 3.162

8.  Comparison of the structural requirements for bacteriochlorophyll binding in the core light-harvesting complexes of Rhodospirillum rubrum and Rhodospirillum sphaeroides using reconstitution methodology with bacteriochlorophyll analogs.

Authors:  C M Davis; P S Parkes-Loach; C K Cook; K A Meadows; M Bandilla; H Scheer; P A Loach
Journal:  Biochemistry       Date:  1996-03-05       Impact factor: 3.162

9.  The crystal structure of the light-harvesting complex II (B800-850) from Rhodospirillum molischianum.

Authors:  J Koepke; X Hu; C Muenke; K Schulten; H Michel
Journal:  Structure       Date:  1996-05-15       Impact factor: 5.006

10.  Structure of the photochemical reaction centre of a spheroidene-containing purple-bacterium, Rhodobacter sphaeroides Y, at 3 A resolution.

Authors:  B Arnoux; J F Gaucher; A Ducruix; F Reiss-Husson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1995-05-01
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  7 in total

1.  Ligation of water to magnesium chelates of biological importance.

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2.  Relevance of the diastereotopic ligation of magnesium atoms of chlorophylls in the major light-harvesting complex II (LHC II) of green plants.

Authors:  Teodor Silviu Balaban
Journal:  Photosynth Res       Date:  2005-11       Impact factor: 3.573

3.  Design principles for chlorophyll-binding sites in helical proteins.

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4.  Chlorophyll f can replace chlorophyll a in the soluble antenna of dinoflagellates.

Authors:  Miguel A Hernández-Prieto; Roger Hiller; Min Chen
Journal:  Photosynth Res       Date:  2022-01-06       Impact factor: 3.573

5.  Uncovering the mechanism for selective control of the visible and near-IR absorption bands in bacteriochlorophylls a, b and g.

Authors:  Jun-Ichi Fujisawa; Morio Nagata
Journal:  Biophysics (Nagoya-shi)       Date:  2014-06-07

6.  An unusual role for the phytyl chains in the photoprotection of the chlorophylls bound to Water-Soluble Chlorophyll-binding Proteins.

Authors:  Alessandro Agostini; Daniel M Palm; Franz-Josef Schmitt; Marco Albertini; Marilena Di Valentin; Harald Paulsen; Donatella Carbonera
Journal:  Sci Rep       Date:  2017-08-08       Impact factor: 4.379

Review 7.  Chlorophylls, ligands and assembly of light-harvesting complexes in chloroplasts.

Authors:  J Kenneth Hoober; Laura L Eggink; Min Chen
Journal:  Photosynth Res       Date:  2007-05-16       Impact factor: 3.573

  7 in total

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