Literature DB >> 16216570

Bending in the right direction.

Trevor Siggers1, Tonya Silkov, Barry Honig.   

Abstract

The success of a new Monte Carlo algorithm in describing sequence-specific DNA bending is reported. The approach offers the possibility of improved treatments of "indirect readout" effects in the prediction of transcription factor binding sites.

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Year:  2005        PMID： 16216570     DOI： 10.1016/j.str.2005.09.002

Source DB:  PubMed          Journal:  Structure        ISSN： 0969-2126            Impact factor:   5.006


  3 in total

1.  Targeted chemical wedges reveal the role of allosteric DNA modulation in protein-DNA assembly.

Authors:  Rocco Moretti; Leslie J Donato; Mary L Brezinski; Ryan L Stafford; Helena Hoff; Jon S Thorson; Peter B Dervan; Aseem Z Ansari
Journal:  ACS Chem Biol       Date:  2008-04-18       Impact factor: 5.100

2.  Molecular flexibility in ab initio drug docking to DNA: binding-site and binding-mode transitions in all-atom Monte Carlo simulations.

Authors:  Remo Rohs; Itai Bloch; Heinz Sklenar; Zippora Shakked
Journal:  Nucleic Acids Res       Date:  2005-12-13       Impact factor: 16.971

3.  CSI-Tree: a regression tree approach for modeling binding properties of DNA-binding molecules based on cognate site identification (CSI) data.

Authors:  Sündüz Keleş; Christopher L Warren; Clayton D Carlson; Aseem Z Ansari
Journal:  Nucleic Acids Res       Date:  2008-04-13       Impact factor: 16.971
  3 in total

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