Literature DB >> 16215751

Spectral broadening of the Soret band in myoglobin: an interpretation by the full spectrum of low-frequency modes from a normal modes analysis.

Antonio Cupane1, Marco Cammarata, Lorenzo Cordone, Maurizio Leone, Eugenio Vitrano, Niklas Engler, Fritz Parak.   

Abstract

In this work the temperature dependence of the Soret band line shape in carbon-monoxy myoglobin is re-analyzed by using both the full correlator approach in the time domain and the frequency domain approach. The new analyses exploit the full density of vibrational states of carbon-monoxy myoglobin available from normal modes analysis, and avoid the artificial division of the entire set of vibrational modes coupled to the Soret transition into "high-frequency" and "low-frequency" subsets; the frequency domain analysis, however, makes use of the so-called short-times approximation, while the time domain one avoids it. Time domain and frequency domain analyses give very similar results, thus supporting the applicability of the short-times approximation to the analysis of hemeprotein spectra; in particular, they clearly indicate the presence of spectral heterogeneity in the Soret band of carbon-monoxy myoglobin. The analyses also show that a temperature dependence of the Gaussian width parameter steeper than the hyperbolic cotangent law predicted by the Einstein harmonic oscillator and/or a temperature dependence of inhomogeneous broadening are not sufficient to obtain quantitative information on the magnitude of an-harmonic contributions to the iron-heme plane motion. However, the dependence of the previous two quantities may be used to obtain semiquantitative information on the overall coupling of the Soret transition to the low-frequency modes and therefore on the dynamic properties of the heme pocket in different states of the protein.

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Year:  2005        PMID: 16215751     DOI: 10.1007/s00249-004-0458-4

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  9 in total

1.  Protein dynamics. Vibrational coupling, spectral broadening mechanisms, and anharmonicity effects in carbonmonoxy heme proteins studied by the temperature dependence of the Soret band lineshape.

Authors:  A Di Pace; A Cupane; M Leone; E Vitrano; L Cordone
Journal:  Biophys J       Date:  1992-08       Impact factor: 4.033

2.  Spectral broadening in biomolecules.

Authors: 
Journal:  Phys Rev Lett       Date:  1986-09-08       Impact factor: 9.161

3.  Structural fluctuations of myoglobin from normal-modes, Mössbauer, Raman, and absorption spectroscopy.

Authors:  B Melchers; E W Knapp; F Parak; L Cordone; A Cupane; M Leone
Journal:  Biophys J       Date:  1996-05       Impact factor: 4.033

Review 4.  Conformational substates in proteins.

Authors:  H Frauenfelder; F Parak; R D Young
Journal:  Annu Rev Biophys Biophys Chem       Date:  1988

5.  Dynamical transition of myoglobin revealed by inelastic neutron scattering.

Authors:  W Doster; S Cusack; W Petry
Journal:  Nature       Date:  1989-02-23       Impact factor: 49.962

Review 6.  Low temperature optical absorption spectroscopy: an approach to the study of stereodynamic properties of hemeproteins.

Authors:  A Cupane; M Leone; E Vitrano; L Cordone
Journal:  Eur Biophys J       Date:  1995       Impact factor: 1.733

7.  Protein dynamics. Mössbauer spectroscopy on deoxymyoglobin crystals.

Authors:  F Parak; E W Knapp; D Kucheida
Journal:  J Mol Biol       Date:  1982-10-15       Impact factor: 5.469

8.  Dynamics of ligand binding to myoglobin.

Authors:  R H Austin; K W Beeson; L Eisenstein; H Frauenfelder; I C Gunsalus
Journal:  Biochemistry       Date:  1975-12-02       Impact factor: 3.162

9.  Thermal broadening of the Soret band in heme complexes and in heme-proteins: role of iron dynamics.

Authors:  M Leone; A Cupane; V Militello; L Cordone
Journal:  Eur Biophys J       Date:  1994       Impact factor: 1.733

  9 in total

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