Literature DB >> 16200203

Mining yeast in silico unearths a golden nugget for mitochondrial biology.

Robert L Nussbaum1.   

Abstract

NADH:ubiquinone oxidoreductase (complex I) of the electron transport chain is a multimeric mitochondrial enzyme of approximately 1000 kDa consisting of 46 different proteins encoded by both the mitochondrial and nuclear genomes. Little is known about the cellular mechanisms and protein chaperones that guide its assembly. In this issue of the JCI, Ogilvie et al. use genomic sequence data to compare the proteins produced by yeasts with and without complex I in order to generate a list of proteins whose human orthologs might serve as complex I assembly proteins. The gene encoding one of these candidate proteins, B17.2L, was found to harbor a nonsense mutation in one of 28 patients with a deficiency of complex I. B17.2L associated with subcomplexes that are seen when complex I assembly is incomplete. The research described here combines clever model organism genomics and bioinformatics with sophisticated human molecular and biochemical genetics to identify the first mammalian protein required for the normal assembly of complex I.

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Year:  2005        PMID: 16200203      PMCID: PMC1236702          DOI: 10.1172/JCI26625

Source DB:  PubMed          Journal:  J Clin Invest        ISSN: 0021-9738            Impact factor:   14.808


  17 in total

Review 1.  Biogenesis of respiratory complex I.

Authors:  U Schulte
Journal:  J Bioenerg Biomembr       Date:  2001-06       Impact factor: 2.945

2.  Analysis of the subunit composition of complex I from bovine heart mitochondria.

Authors:  Joe Carroll; Ian M Fearnley; Richard J Shannon; Judy Hirst; John E Walker
Journal:  Mol Cell Proteomics       Date:  2003-02-22       Impact factor: 5.911

3.  A molecular chaperone for mitochondrial complex I assembly is mutated in a progressive encephalopathy.

Authors:  Isla Ogilvie; Nancy G Kennaway; Eric A Shoubridge
Journal:  J Clin Invest       Date:  2005-10       Impact factor: 14.808

4.  A mutant mitochondrial respiratory chain assembly protein causes complex III deficiency in patients with tubulopathy, encephalopathy and liver failure.

Authors:  P de Lonlay; I Valnot; A Barrientos; M Gorbatyuk; A Tzagoloff; J W Taanman; E Benayoun; D Chrétien; N Kadhom; A Lombès; H O de Baulny; P Niaudet; A Munnich; P Rustin; A Rötig
Journal:  Nat Genet       Date:  2001-09       Impact factor: 38.330

Review 5.  Respiratory chain complex I deficiency.

Authors:  R H Triepels; L P Van Den Heuvel; J M Trijbels; J A Smeitink
Journal:  Am J Med Genet       Date:  2001

6.  Biophysical and structural characterization of proton-translocating NADH-dehydrogenase (complex I) from the strictly aerobic yeast Yarrowia lipolytica.

Authors:  R Djafarzadeh; S Kerscher; K Zwicker; M Radermacher; M Lindahl; H Schägger; U Brandt
Journal:  Biochim Biophys Acta       Date:  2000-07-20

7.  CIA30 complex I assembly factor: a candidate for human complex I deficiency?

Authors:  Rolf Janssen; Jan Smeitink; Roel Smeets; Lambert van Den Heuvel
Journal:  Hum Genet       Date:  2002-02-01       Impact factor: 4.132

8.  Human mitochondrial complex I assembles through the combination of evolutionary conserved modules: a framework to interpret complex I deficiencies.

Authors:  Cristina Ugalde; Rutger Vogel; Richard Huijbens; Bert Van Den Heuvel; Jan Smeitink; Leo Nijtmans
Journal:  Hum Mol Genet       Date:  2004-08-18       Impact factor: 6.150

9.  Mutant NDUFS3 subunit of mitochondrial complex I causes Leigh syndrome.

Authors:  P Bénit; A Slama; F Cartault; I Giurgea; D Chretien; S Lebon; C Marsac; A Munnich; A Rötig; P Rustin
Journal:  J Med Genet       Date:  2004-01       Impact factor: 6.318

10.  Identification and characterization of a common set of complex I assembly intermediates in mitochondria from patients with complex I deficiency.

Authors:  Hana Antonicka; Isla Ogilvie; Tanja Taivassalo; Roberto P Anitori; Ronald G Haller; John Vissing; Nancy G Kennaway; Eric A Shoubridge
Journal:  J Biol Chem       Date:  2003-08-26       Impact factor: 5.157

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  2 in total

1.  Mitochondrial Respiratory Defect Causes Dysfunctional Lactate Turnover via AMP-activated Protein Kinase Activation in Human-induced Pluripotent Stem Cell-derived Hepatocytes.

Authors:  Ilkyun Im; Mi-Jin Jang; Seung Ju Park; Sang-Hee Lee; Jin-Ho Choi; Han-Wook Yoo; Seyun Kim; Yong-Mahn Han
Journal:  J Biol Chem       Date:  2015-10-21       Impact factor: 5.157

2.  Microarray data mining using landmark gene-guided clustering.

Authors:  Pankaj Chopra; Jaewoo Kang; Jiong Yang; HyungJun Cho; Heenam Stanley Kim; Min-Goo Lee
Journal:  BMC Bioinformatics       Date:  2008-02-11       Impact factor: 3.169

  2 in total

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