Literature DB >> 16199574

Characterization of a novel glucosamine-6-phosphate deaminase from a hyperthermophilic archaeon.

Takeshi Tanaka1, Fumikazu Takahashi, Toshiaki Fukui, Shinsuke Fujiwara, Haruyuki Atomi, Tadayuki Imanaka.   

Abstract

A key step in amino sugar metabolism is the interconversion between fructose-6-phosphate (Fru6P) and glucosamine-6-phosphate (GlcN6P). This conversion is catalyzed in the catabolic and anabolic directions by GlcN6P deaminase and GlcN6P synthase, respectively, two enzymes that show no relationship with one another in terms of primary structure. In this study, we examined the catalytic properties and regulatory features of the glmD gene product (GlmD(Tk)) present within a chitin degradation gene cluster in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. Although the protein GlmD(Tk) was predicted as a probable sugar isomerase related to the C-terminal sugar isomerase domain of GlcN6P synthase, the recombinant GlmD(Tk) clearly exhibited GlcN6P deaminase activity, generating Fru6P and ammonia from GlcN6P. This enzyme also catalyzed the reverse reaction, the ammonia-dependent amination/isomerization of Fru6P to GlcN6P, whereas no GlcN6P synthase activity dependent on glutamine was observed. Kinetic analyses clarified the preference of this enzyme for the deaminase reaction rather than the reverse one, consistent with the catabolic function of GlmD(Tk). In T. kodakaraensis cells, glmD(Tk) was polycistronically transcribed together with upstream genes encoding an ABC transporter and a downstream exo-beta-glucosaminidase gene (glmA(Tk)) within the gene cluster, and their expression was induced by the chitin degradation intermediate, diacetylchitobiose. The results presented here indicate that GlmD(Tk) is actually a GlcN6P deaminase functioning in the entry of chitin-derived monosaccharides to glycolysis in this hyperthermophile. This enzyme is the first example of an archaeal GlcN6P deaminase and is a structurally novel type distinct from any previously known GlcN6P deaminase.

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Year:  2005        PMID: 16199574      PMCID: PMC1251617          DOI: 10.1128/JB.187.20.7038-7044.2005

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  29 in total

1.  Channeling of ammonia in glucosamine-6-phosphate synthase.

Authors:  A Teplyakov; G Obmolova; B Badet; M A Badet-Denisot
Journal:  J Mol Biol       Date:  2001-11-09       Impact factor: 5.469

2.  Different cleavage specificities of the dual catalytic domains in chitinase from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1.

Authors:  T Tanaka; T Fukui; T Imanaka
Journal:  J Biol Chem       Date:  2001-07-23       Impact factor: 5.157

3.  Pathways for the utilization of N-acetyl-galactosamine and galactosamine in Escherichia coli.

Authors:  A Brinkkötter; H Klöss; C Alpert; J W Lengeler
Journal:  Mol Microbiol       Date:  2000-07       Impact factor: 3.501

4.  Biochemical characterization, cloning, and sequencing of ADP-dependent (AMP-forming) glucokinase from two hyperthermophilic archaea, Pyrococcus furiosus and Thermococcus litoralis.

Authors:  S Koga; I Yoshioka; H Sakuraba; M Takahashi; S Sakasegawa; S Shimizu; T Ohshima
Journal:  J Biochem       Date:  2000-12       Impact factor: 3.387

5.  Glucosamine-6-phosphate deaminase from beef kidney is an allosteric system of the V-type.

Authors:  R Lara-Lemus; M L Calcagno
Journal:  Biochim Biophys Acta       Date:  1998-10-14

6.  Kinetic characterization of human glutamine-fructose-6-phosphate amidotransferase I: potent feedback inhibition by glucosamine 6-phosphate.

Authors:  Kay O Broschat; Christine Gorka; Jimmy D Page; Cynthia L Martin-Berger; Michael S Davies; Horng-chih Huang Hc; Eric A Gulve; William J Salsgiver; Thomas P Kasten
Journal:  J Biol Chem       Date:  2002-02-12       Impact factor: 5.157

Review 7.  The mechanism of glutamine-dependent amidotransferases.

Authors:  F Massière; M A Badet-Denisot
Journal:  Cell Mol Life Sci       Date:  1998-03       Impact factor: 9.261

8.  Involvement of the C terminus in intramolecular nitrogen channeling in glucosamine 6-phosphate synthase: evidence from a 1.6 A crystal structure of the isomerase domain.

Authors:  A Teplyakov; G Obmolova; M A Badet-Denisot; B Badet; I Polikarpov
Journal:  Structure       Date:  1998-08-15       Impact factor: 5.006

9.  Gene analysis and enzymatic properties of thermostable beta-glycosidase from Pyrococcus kodakaraensis KOD1.

Authors:  S Ezaki; K Miyaoku; K Nishi; T Tanaka; S Fujiwara; M Takagi; H Atomi; T Imanaka
Journal:  J Biosci Bioeng       Date:  1999       Impact factor: 2.894

10.  Concerted action of diacetylchitobiose deacetylase and exo-beta-D-glucosaminidase in a novel chitinolytic pathway in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1.

Authors:  Takeshi Tanaka; Toshiaki Fukui; Shinsuke Fujiwara; Haruyuki Atomi; Tadayuki Imanaka
Journal:  J Biol Chem       Date:  2004-05-10       Impact factor: 5.157

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2.  Analysis of the complete genome sequence of the archaeon Pyrococcus chitonophagus DSM 10152 (formerly Thermococcus chitonophagus).

Authors:  Konstantinos Papadimitriou; Panagiotis K Baharidis; Anastasios Georgoulis; Marion Engel; Maria Louka; Georgia Karamolegkou; Aggeliki Tsoka; Jochen Blom; Bruno Pot; Piotr Malecki; Wojciech Rypniewski; Harald Huber; Michael Schloter; Constantinos Vorgias
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Review 3.  Cultivation of the Next-Generation Probiotic Akkermansia muciniphila, Methods of Its Safe Delivery to the Intestine, and Factors Contributing to Its Growth In Vivo.

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4.  Engineering of the Hyperthermophilic Archaeon Thermococcus kodakarensis for Chitin-Dependent Hydrogen Production.

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5.  Allosteric Activation of Escherichia coli Glucosamine-6-Phosphate Deaminase (NagB) In Vivo Justified by Intracellular Amino Sugar Metabolite Concentrations.

Authors:  Laura I Álvarez-Añorve; Isabelle Gaugué; Hannes Link; Jorge Marcos-Viquez; Dana M Díaz-Jiménez; Sergio Zonszein; Ismael Bustos-Jaimes; Isabelle Schmitz-Afonso; Mario L Calcagno; Jacqueline Plumbridge
Journal:  J Bacteriol       Date:  2016-05-13       Impact factor: 3.490

6.  Acetamido sugar biosynthesis in the Euryarchaea.

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Journal:  J Bacteriol       Date:  2008-02-08       Impact factor: 3.490

7.  Heterogeneity of quaternary structure of glucosamine-6-phosphate deaminase from Giardia lamblia.

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Journal:  Parasitol Res       Date:  2014-10-19       Impact factor: 2.289

8.  Genetic analysis of the roles of agaA, agaI, and agaS genes in the N-acetyl-D-galactosamine and D-galactosamine catabolic pathways in Escherichia coli strains O157:H7 and C.

Authors:  Zonglin Hu; Isha R Patel; Amit Mukherjee
Journal:  BMC Microbiol       Date:  2013-05-01       Impact factor: 3.605

9.  Model-driven design of a minimal medium for Akkermansia muciniphila confirms mucus adaptation.

Authors:  Kees C H van der Ark; Steven Aalvink; Maria Suarez-Diez; Peter J Schaap; Willem M de Vos; Clara Belzer
Journal:  Microb Biotechnol       Date:  2018-01-26       Impact factor: 5.813

10.  The TK0271 Protein Activates Transcription of Aromatic Amino Acid Biosynthesis Genes in the Hyperthermophilic Archaeon Thermococcus kodakarensis.

Authors:  Yasuyuki Yamamoto; Tamotsu Kanai; Tsuyoshi Kaneseki; Haruyuki Atomi
Journal:  mBio       Date:  2019-09-10       Impact factor: 7.867

  10 in total

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