Literature DB >> 16197128

Coarse nonlinear dynamics and metastability of filling-emptying transitions: water in carbon nanotubes.

Saravanapriyan Sriraman1, Ioannis G Kevrekidis, Gerhard Hummer.   

Abstract

Using a coarse-grained molecular dynamics (CMD) approach we study the apparent nonlinear dynamics of water molecules filling or emptying carbon nanotubes as a function of system parameters. Different levels of the pore hydrophobicity give rise to tubes that are empty, water-filled, or fluctuate between these two long-lived metastable states. The corresponding coarse-grained free-energy surfaces and their hysteretic parameter dependence are explored by linking MD to continuum fixed point and bifurcation algorithms. The results are validated through equilibrium MD simulations.

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Year:  2005        PMID: 16197128     DOI: 10.1103/PhysRevLett.95.130603

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  5 in total

1.  Multiwalled ice helixes and ice nanotubes.

Authors:  Jaeil Bai; Jun Wang; X C Zeng
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-14       Impact factor: 11.205

2.  Motifs for molecular recognition exploiting hydrophobic enclosure in protein-ligand binding.

Authors:  Tom Young; Robert Abel; Byungchan Kim; Bruce J Berne; Richard A Friesner
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-04       Impact factor: 11.205

3.  Bubbles, gating, and anesthetics in ion channels.

Authors:  Roland Roth; Dirk Gillespie; Wolfgang Nonner; Robert E Eisenberg
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

4.  Studying the unfolding kinetics of proteins under pressure using long molecular dynamic simulation runs.

Authors:  Osvaldo Chara; José Raúl Grigera; Andrés N McCarthy
Journal:  J Biol Phys       Date:  2008-07-01       Impact factor: 1.365

Review 5.  Network models for molecular kinetics and their initial applications to human health.

Authors:  Gregory R Bowman; Xuhui Huang; Vijay S Pande
Journal:  Cell Res       Date:  2010-04-27       Impact factor: 25.617

  5 in total

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