Literature DB >> 16196747

Flux boundary conditions in particle simulations.

Eirik G Flekkøy1, Rafael Delgado-Buscalioni, Peter V Coveney.   

Abstract

Flux boundary conditions are interesting in a number of contexts ranging from multiscale simulations to simulations of molecular hydrodynamics in nanoscale systems. Here we introduce, analyze, and test a general scheme to impose boundary conditions that simultaneously control the momentum and energy flux into open particle systems The scheme is shown to handle far from equilibrium simulations. It acquires its main characteristics from the requirement that it fulfills the second law of thermodynamics and thus minimizes the entropy production, when it is applied to reversible processes. It is shown both theoretically and through simulations that the scheme emulates the effect of an extended particle system as far as particle number fluctuations, temperature, and density profiles are concerned. The numerical scheme is further shown to be accurate and stable in both equilibrium and far from equilibrium contexts.

Year:  2005        PMID: 16196747     DOI: 10.1103/PhysRevE.72.026703

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  4 in total

1.  Open-Boundary Molecular Dynamics of a DNA Molecule in a Hybrid Explicit/Implicit Salt Solution.

Authors:  Julija Zavadlav; Jurij Sablić; Rudolf Podgornik; Matej Praprotnik
Journal:  Biophys J       Date:  2018-04-09       Impact factor: 4.033

2.  Inflow/Outflow Boundary Conditions for Particle-Based Blood Flow Simulations: Application to Arterial Bifurcations and Trees.

Authors:  Kirill Lykov; Xuejin Li; Huan Lei; Igor V Pivkin; George Em Karniadakis
Journal:  PLoS Comput Biol       Date:  2015-08-28       Impact factor: 4.475

3.  Dissipative Particle Dynamics Simulation of Ultrasound Propagation through Liquid Water.

Authors:  Petra Papež; Matej Praprotnik
Journal:  J Chem Theory Comput       Date:  2022-01-10       Impact factor: 6.006

Review 4.  From adaptive resolution to molecular dynamics of open systems.

Authors:  Robinson Cortes-Huerto; Matej Praprotnik; Kurt Kremer; Luigi Delle Site
Journal:  Eur Phys J B       Date:  2021-09-23       Impact factor: 1.500

  4 in total

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