Literature DB >> 16196669

Finding local community structure in networks.

Aaron Clauset1.   

Abstract

Although the inference of global community structure in networks has recently become a topic of great interest in the physics community, all such algorithms require that the graph be completely known. Here, we define both a measure of local community structure and an algorithm that infers the hierarchy of communities that enclose a given vertex by exploring the graph one vertex at a time. This algorithm runs in time O(k2d) for general graphs when d is the mean degree and k is the number of vertices to be explored. For graphs where exploring a new vertex is time consuming, the running time is linear, O(k). We show that on computer-generated graphs the average behavior of this technique approximates that of algorithms that require global knowledge. As an application, we use this algorithm to extract meaningful local clustering information in the large recommender network of an online retailer.

Year:  2005        PMID: 16196669     DOI: 10.1103/PhysRevE.72.026132

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  45 in total

Review 1.  A systems-biology approach to modular genetic complexity.

Authors:  Gregory W Carter; Cynthia G Rush; Filiz Uygun; Nikita A Sakhanenko; David J Galas; Timothy Galitski
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2.  Local hypergraph clustering using capacity releasing diffusion.

Authors:  Rania Ibrahim; David F Gleich
Journal:  PLoS One       Date:  2020-12-23       Impact factor: 3.240

3.  PatchSearch: a web server for off-target protein identification.

Authors:  Julien Rey; Inès Rasolohery; Pierre Tufféry; Frédéric Guyon; Gautier Moroy
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

4.  Next generation tools for the annotation of human SNPs.

Authors:  Rachel Karchin
Journal:  Brief Bioinform       Date:  2009-01       Impact factor: 11.622

5.  Community Extraction in Multilayer Networks with Heterogeneous Community Structure.

Authors:  James D Wilson; John Palowitch; Shankar Bhamidi; Andrew B Nobel
Journal:  J Mach Learn Res       Date:  2017       Impact factor: 3.654

6.  Community extraction for social networks.

Authors:  Yunpeng Zhao; Elizaveta Levina; Ji Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-18       Impact factor: 11.205

7.  Inferring the functions of longevity genes with modular subnetwork biomarkers of Caenorhabditis elegans aging.

Authors:  Kristen Fortney; Max Kotlyar; Igor Jurisica
Journal:  Genome Biol       Date:  2010-02-03       Impact factor: 13.583

8.  Inferring modules from human protein interactome classes.

Authors:  Elisabetta Marras; Antonella Travaglione; Gautam Chaurasia; Matthias Futschik; Enrico Capobianco
Journal:  BMC Syst Biol       Date:  2010-07-23

9.  Finding local communities in protein networks.

Authors:  Konstantin Voevodski; Shang-Hua Teng; Yu Xia
Journal:  BMC Bioinformatics       Date:  2009-09-18       Impact factor: 3.169

10.  Spectral affinity in protein networks.

Authors:  Konstantin Voevodski; Shang-Hua Teng; Yu Xia
Journal:  BMC Syst Biol       Date:  2009-11-29
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