Literature DB >> 16196644

Network motifs in computational graphs: a case study in software architecture.

Sergi Valverde1, Ricard V Solé.   

Abstract

Complex networks in both nature and technology have been shown to display characteristic, small subgraphs (so-called motifs) which appear to be related to their underlying functionality. All these networks share a common trait: they manipulate information at different scales in order to perform some kind of computation. Here we analyze a large set of software class diagrams and show that several highly frequent network motifs appear to be a consequence of network heterogeneity and size, thus suggesting a somewhat less relevant role of functionality. However, by using a simple model of network growth by duplication and rewiring, it is shown the rules of graph evolution seem to be largely responsible for the observed motif distribution.

Year:  2005        PMID: 16196644     DOI: 10.1103/PhysRevE.72.026107

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  7 in total

1.  Spontaneous emergence of modularity in cellular networks.

Authors:  Ricard V Solé; Sergi Valverde
Journal:  J R Soc Interface       Date:  2008-01-06       Impact factor: 4.118

2.  Punctuated equilibrium in the large-scale evolution of programming languages.

Authors:  Sergi Valverde; Ricard V Solé
Journal:  J R Soc Interface       Date:  2015-06-06       Impact factor: 4.118

3.  Evolving complexity: how tinkering shapes cells, software and ecological networks.

Authors:  Ricard Solé; Sergi Valverde
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-02-24       Impact factor: 6.237

4.  Network motifs for translator stylometry identification.

Authors:  Heba El-Fiqi; Eleni Petraki; Hussein A Abbass
Journal:  PLoS One       Date:  2019-02-08       Impact factor: 3.240

5.  Intrinsic limitations in mainstream methods of identifying network motifs in biology.

Authors:  James Fodor; Michael Brand; Rebecca J Stones; Ashley M Buckle
Journal:  BMC Bioinformatics       Date:  2020-04-29       Impact factor: 3.169

6.  Identifying emerging motif in growing networks.

Authors:  Haijia Shi; Lei Shi
Journal:  PLoS One       Date:  2014-06-17       Impact factor: 3.240

Review 7.  Review of tools and algorithms for network motif discovery in biological networks.

Authors:  Sabyasachi Patra; Anjali Mohapatra
Journal:  IET Syst Biol       Date:  2020-08       Impact factor: 1.615

  7 in total

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