Literature DB >> 16188923

Medusa: a simple tool for interaction graph analysis.

Sean D Hooper1, Peer Bork.   

Abstract

SUMMARY: Medusa is a Java application for visualizing and manipulating graphs of interaction, such as data from the STRING database. It features an intuitive user interface developed with the help of biologists. Medusa is optimized for accessing protein interaction data from STRING, but can be used for any type of graph from any scientific field.

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Year:  2005        PMID： 16188923     DOI： 10.1093/bioinformatics/bti696

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  79 in total

Review 1.  Tools for protein-protein interaction network analysis in cancer research.

Authors:  Rebeca Sanz-Pamplona; Antoni Berenguer; Xavier Sole; David Cordero; Marta Crous-Bou; Jordi Serra-Musach; Elisabet Guinó; Miguel Ángel Pujana; Víctor Moreno
Journal:  Clin Transl Oncol       Date:  2012-01       Impact factor: 3.405

2.  An integrated approach of predicted miR-34a targets identifies a signature for gastric cancer.

Authors:  Tiantian Tang; Rongjian Su; Baoquan Wang; Yunli Zhang
Journal:  Oncol Lett       Date:  2015-05-26       Impact factor: 2.967

3.  PathBuilder--open source software for annotating and developing pathway resources.

Authors:  Kumaran Kandasamy; Shivakumar Keerthikumar; Rajesh Raju; T S Keshava Prasad; Y L Ramachandra; Sujatha Mohan; Akhilesh Pandey
Journal:  Bioinformatics       Date:  2009-07-23       Impact factor: 6.937

4.  GTPase-mediated regulation of the unfolded protein response in Caenorhabditis elegans is dependent on the AAA+ ATPase CDC-48.

Authors:  Marie-Elaine Caruso; Sarah Jenna; Marion Bouchecareilh; David L Baillie; Daniel Boismenu; Dalia Halawani; Martin Latterich; Eric Chevet
Journal:  Mol Cell Biol       Date:  2008-05-05       Impact factor: 4.272

5.  TVNViewer: an interactive visualization tool for exploring networks that change over time or space.

Authors:  Ross E Curtis; Amos Yuen; Le Song; Anuj Goyal; Eric P Xing
Journal:  Bioinformatics       Date:  2011-05-05       Impact factor: 6.937

Review 6.  Visualization of omics data for systems biology.

Authors:  Nils Gehlenborg; Seán I O'Donoghue; Nitin S Baliga; Alexander Goesmann; Matthew A Hibbs; Hiroaki Kitano; Oliver Kohlbacher; Heiko Neuweger; Reinhard Schneider; Dan Tenenbaum; Anne-Claude Gavin
Journal:  Nat Methods       Date:  2010-03       Impact factor: 28.547

7.  Combined Gene Expression and RNAi Screening to Identify Alkylation Damage Survival Pathways from Fly to Human.

Authors:  Alfeu Zanotto-Filho; Ravi Dashnamoorthy; Eva Loranc; Luis H T de Souza; José C F Moreira; Uthra Suresh; Yidong Chen; Alexander J R Bishop
Journal:  PLoS One       Date:  2016-04-21       Impact factor: 3.240

Review 8.  Exploring the multifactorial nature of autism through computational systems biology: calcium and the Rho GTPase RAC1 under the spotlight.

Authors:  Fares Zeidán-Chuliá; José Luiz Rybarczyk-Filho; Alla B Salmina; Ben-Hur Neves de Oliveira; Mami Noda; José Cláudio F Moreira
Journal:  Neuromolecular Med       Date:  2013-03-02       Impact factor: 3.843

9.  KEGG spider: interpretation of genomics data in the context of the global gene metabolic network.

Authors:  Alexey V Antonov; Sabine Dietmann; Hans W Mewes
Journal:  Genome Biol       Date:  2008-12-18       Impact factor: 13.583

10.  POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data.

Authors:  Joana P Gonçalves; Mário Grãos; André X C N Valente
Journal:  J R Soc Interface       Date:  2008-11-28       Impact factor: 4.118
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