Literature DB >> 16182339

Effect of tissue fixatives on telomere length determination by quantitative PCR.

Christian Koppelstaetter1, Paul Jennings, Kathrin Hochegger, Paul Perco, Rudolf Ischia, Henryk Karkoszka, Gert Mayer.   

Abstract

Telomere length is a well established marker of cellular senescence and thus biological age. Quantitative PCR allows the determination even from very low amounts of tissue by using telomere specific and single copy gene primers. Comparing a directly processed tissue sample to a 4% formaldehyde fixed one showed a significantly reduced efficiency of PCR reactions (mainly in single copy gene experiments) in a storage time-dependent manner resulting in an artificial increase in reported relative telomere length. This effect was not seen when the tissue was stored in RNA later solution. In summary, telomere length determination from formaldehyde fixed material by quantitative PCR is not a reliable method. Unfortunately therefore, many easily accessible tissue samples from pathology laboratories are unsuitable for this technique.

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Year:  2005        PMID: 16182339     DOI: 10.1016/j.mad.2005.08.003

Source DB:  PubMed          Journal:  Mech Ageing Dev        ISSN: 0047-6374            Impact factor:   5.432


  12 in total

1.  Improved methodology for identification of protists and microalgae from plankton samples preserved in Lugol's iodine solution: combining microscopic analysis with single-cell PCR.

Authors:  Barbara M Auinger; Karin Pfandl; Jens Boenigk
Journal:  Appl Environ Microbiol       Date:  2008-02-22       Impact factor: 4.792

Review 2.  Telomere length: a review of methods for measurement.

Authors:  Alison J Montpetit; Areej A Alhareeri; Marty Montpetit; Angela R Starkweather; Lynne W Elmore; Kristin Filler; Lathika Mohanraj; Candace W Burton; Victoria S Menzies; Debra E Lyon; Colleen K Jackson-Cook
Journal:  Nurs Res       Date:  2014 Jul-Aug       Impact factor: 2.381

3.  Evidence for the complexity of microRNA-mediated regulation in ovarian cancer: a systems approach.

Authors:  Shubin W Shahab; Lilya V Matyunina; Roman Mezencev; L DeEtte Walker; Nathan J Bowen; Benedict B Benigno; John F McDonald
Journal:  PLoS One       Date:  2011-07-21       Impact factor: 3.240

4.  Lower CD28+ T cell proportions were associated with CMV-seropositivity in patients with Hashimoto's thyroiditis.

Authors:  Martina Prelog; Jörn Schönlaub; Reinhard Würzner; Christian Koppelstaetter; Giovanni Almanzar; Andrea Brunner; Martin Gasser; Rupert Prommegger; Gabriele Häusler; Klaus Kapelari; Wolfgang Högler
Journal:  BMC Endocr Disord       Date:  2013-09-05       Impact factor: 2.763

5.  Effects of formalin fixation, paraffin embedding, and time of storage on DNA preservation in brain tissue: a BrainNet Europe study.

Authors:  Isidre Ferrer; Judith Armstrong; Sabina Capellari; Piero Parchi; Thomas Arzberger; Jeanne Bell; Herbert Budka; Thomas Ströbel; Giorgio Giaccone; Giacomina Rossi; Nenad Bogdanovic; Peter Fakai; Andrea Schmitt; Peter Riederers; Safa Al-Sarraj; Rivka Ravid; Hans Kretzschmar
Journal:  Brain Pathol       Date:  2007-04-23       Impact factor: 6.508

6.  Maternal cigarette smoking and its effect on neonatal lymphocyte subpopulations and replication.

Authors:  Giovanni Almanzar; Gernot Eberle; Andrea Lassacher; Christian Specht; Christian Koppelstaetter; Peter Heinz-Erian; Rudolf Trawöger; David Bernhard; Martina Prelog
Journal:  BMC Pediatr       Date:  2013-04-18       Impact factor: 2.125

7.  The effects of MicroRNA transfections on global patterns of gene expression in ovarian cancer cells are functionally coordinated.

Authors:  Shubin W Shahab; Lilya V Matyunina; Christopher G Hill; Lijuan Wang; Roman Mezencev; L DeEtte Walker; John F McDonald
Journal:  BMC Med Genomics       Date:  2012-08-01       Impact factor: 3.063

8.  Hypermethylation of FOXP3 Promoter and Premature Aging of the Immune System in Female Patients with Panic Disorder?

Authors:  Martina Prelog; Deborah Hilligardt; Christian A Schmidt; Grzegorz K Przybylski; Johannes Leierer; Giovanni Almanzar; Nady El Hajj; Klaus-Peter Lesch; Volker Arolt; Peter Zwanzger; Thomas Haaf; Katharina Domschke
Journal:  PLoS One       Date:  2016-06-30       Impact factor: 3.240

9.  Preanalytical Conditions and DNA Isolation Methods Affect Telomere Length Quantification in Whole Blood.

Authors:  Alexander Tolios; Daniel Teupser; Lesca M Holdt
Journal:  PLoS One       Date:  2015-12-04       Impact factor: 3.240

10.  Efforts of the human immune system to maintain the peripheral CD8+ T cell compartment after childhood thymectomy.

Authors:  Manuela Zlamy; Giovanni Almanzar; Walther Parson; Christian Schmidt; Johannes Leierer; Birgit Weinberger; Verena Jeller; Karin Unsinn; Matthias Eyrich; Reinhard Würzner; Martina Prelog
Journal:  Immun Ageing       Date:  2016-02-02       Impact factor: 6.400

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