Literature DB >> 16180902

Statistically validated QSARs, based on theoretical descriptors, for modeling aquatic toxicity of organic chemicals in Pimephales promelas (fathead minnow).

Ester Papa1, Fulvio Villa, Paola Gramatica.   

Abstract

The use of Quantitative Structure-Activity Relationships in assessing the potential negative effects of chemicals plays an important role in ecotoxicology. (LC50)(96h) in Pimephales promelas (Duluth database) is widely modeled as an aquatic toxicity end-point. The object of this study was to compare different molecular descriptors in the development of new statistically validated QSAR models to predict the aquatic toxicity of chemicals classified according to their MOA and in a unique general model. The applied multiple linear regression approach (ordinary least squares) is based on theoretical molecular descriptor variety (1D, 2D, and 3D, from DRAGON package, and some calculated logP). The best combination of modeling descriptors was selected by the Genetic Algorithm-Variable Subset Selection procedure. The robustness and the predictive performance of the proposed models was verified using both internal (cross-validation by LOO, bootstrap, Y-scrambling) and external statistical validations (by splitting the original data set into training and validation sets by Kohonen-artificial neural networks (K-ANN)). The model applicability domain (AD) was checked by the leverage approach to verify prediction reliability.

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Year:  2005        PMID: 16180902     DOI: 10.1021/ci050212l

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  10 in total

1.  First computational chemistry multi-target model for anti-Alzheimer, anti-parasitic, anti-fungi, and anti-bacterial activity of GSK-3 inhibitors in vitro, in vivo, and in different cellular lines.

Authors:  Isela García; Yagamare Fall; Generosa Gómez; Humberto González-Díaz
Journal:  Mol Divers       Date:  2010-10-08       Impact factor: 2.943

2.  Predicting skin permeability from complex chemical mixtures: dependency of quantitative structure permeation relationships on biology of skin model used.

Authors:  Jim E Riviere; James D Brooks
Journal:  Toxicol Sci       Date:  2010-10-14       Impact factor: 4.849

3.  Theoretical study of GSK-3α: neural networks QSAR studies for the design of new inhibitors using 2D descriptors.

Authors:  Isela García; Yagamare Fall; Xerardo García-Mera; Francisco Prado-Prado
Journal:  Mol Divers       Date:  2011-07-07       Impact factor: 2.943

4.  Acute aquatic toxicity of organic solvents modeled by QSARs.

Authors:  A Levet; C Bordes; Y Clément; P Mignon; C Morell; H Chermette; P Marote; P Lantéri
Journal:  J Mol Model       Date:  2016-11-09       Impact factor: 1.810

5.  Prediction of partition and distribution coefficients in various solvent pairs with COSMO-RS.

Authors:  Sofja Tshepelevitsh; Kertu Hernits; Ivo Leito
Journal:  J Comput Aided Mol Des       Date:  2018-05-30       Impact factor: 3.686

Review 6.  On exploring structure-activity relationships.

Authors:  Rajarshi Guha
Journal:  Methods Mol Biol       Date:  2013

7.  Quantitative Structure-Activity Relationships Study on the Rate Constants of Polychlorinated Dibenzo-p-Dioxins with OH Radical.

Authors:  Chuansong Qi; Chenxi Zhang; Xiaomin Sun
Journal:  Int J Mol Sci       Date:  2015-08-12       Impact factor: 5.923

8.  Chiral Brønsted Acid-Catalyzed Enantioselective α-Amidoalkylation Reactions: A Joint Experimental and Predictive Study.

Authors:  Eider Aranzamendi; Sonia Arrasate; Nuria Sotomayor; Humberto González-Díaz; Esther Lete
Journal:  ChemistryOpen       Date:  2016-11-23       Impact factor: 2.911

9.  Prior Knowledge for Predictive Modeling: The Case of Acute Aquatic Toxicity.

Authors:  Gulnara Shavalieva; Stavros Papadokonstantakis; Gregory Peters
Journal:  J Chem Inf Model       Date:  2022-08-23       Impact factor: 6.162

10.  QSARINS-Chem standalone version: A new platform-independent software to profile chemicals for physico-chemical properties, fate, and toxicity.

Authors:  Nicola Chirico; Alessandro Sangion; Paola Gramatica; Linda Bertato; Ilaria Casartelli; Ester Papa
Journal:  J Comput Chem       Date:  2021-05-11       Impact factor: 3.376

  10 in total

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