Literature DB >> 16177791

DNA sequence and analysis of human chromosome 18.

Chad Nusbaum1, Michael C Zody, Mark L Borowsky, Michael Kamal, Chinnappa D Kodira, Todd D Taylor, Charles A Whittaker, Jean L Chang, Christina A Cuomo, Ken Dewar, Michael G FitzGerald, Xiaoping Yang, Amr Abouelleil, Nicole R Allen, Scott Anderson, Toby Bloom, Boris Bugalter, Jonathan Butler, April Cook, David DeCaprio, Reinhard Engels, Manuel Garber, Andreas Gnirke, Nabil Hafez, Jennifer L Hall, Catherine Hosage Norman, Takehiko Itoh, David B Jaffe, Yoko Kuroki, Jessica Lehoczky, Annie Lui, Pendexter Macdonald, Evan Mauceli, Tarjei S Mikkelsen, Jerome W Naylor, Robert Nicol, Cindy Nguyen, Hideki Noguchi, Sinéad B O'Leary, Keith O'Neill, Bruno Piqani, Cherylyn L Smith, Jessica A Talamas, Kerri Topham, Yasushi Totoki, Atsushi Toyoda, Hester M Wain, Sarah K Young, Qiandong Zeng, Andrew R Zimmer, Asao Fujiyama, Masahira Hattori, Bruce W Birren, Yoshiyuki Sakaki, Eric S Lander.   

Abstract

Chromosome 18 appears to have the lowest gene density of any human chromosome and is one of only three chromosomes for which trisomic individuals survive to term. There are also a number of genetic disorders stemming from chromosome 18 trisomy and aneuploidy. Here we report the finished sequence and gene annotation of human chromosome 18, which will allow a better understanding of the normal and disease biology of this chromosome. Despite the low density of protein-coding genes on chromosome 18, we find that the proportion of non-protein-coding sequences evolutionarily conserved among mammals is close to the genome-wide average. Extending this analysis to the entire human genome, we find that the density of conserved non-protein-coding sequences is largely uncorrelated with gene density. This has important implications for the nature and roles of non-protein-coding sequence elements.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16177791     DOI: 10.1038/nature03983

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  16 in total

Review 1.  The origin and evolution of vertebrate sex chromosomes and dosage compensation.

Authors:  A M Livernois; J A M Graves; P D Waters
Journal:  Heredity (Edinb)       Date:  2011-11-16       Impact factor: 3.821

2.  The adaptive significance of unproductive alternative splicing in primates.

Authors:  Adonis Skandalis; Mark Frampton; Jon Seger; Miriam H Richards
Journal:  RNA       Date:  2010-08-18       Impact factor: 4.942

3.  The implications of alternative splicing in the ENCODE protein complement.

Authors:  Michael L Tress; Pier Luigi Martelli; Adam Frankish; Gabrielle A Reeves; Jan Jaap Wesselink; Corin Yeats; Páll Isólfur Olason; Mario Albrecht; Hedi Hegyi; Alejandro Giorgetti; Domenico Raimondo; Julien Lagarde; Roman A Laskowski; Gonzalo López; Michael I Sadowski; James D Watson; Piero Fariselli; Ivan Rossi; Alinda Nagy; Wang Kai; Zenia Størling; Massimiliano Orsini; Yassen Assenov; Hagen Blankenburg; Carola Huthmacher; Fidel Ramírez; Andreas Schlicker; France Denoeud; Phil Jones; Samuel Kerrien; Sandra Orchard; Stylianos E Antonarakis; Alexandre Reymond; Ewan Birney; Søren Brunak; Rita Casadio; Roderic Guigo; Jennifer Harrow; Henning Hermjakob; David T Jones; Thomas Lengauer; Christine A Orengo; László Patthy; Janet M Thornton; Anna Tramontano; Alfonso Valencia
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-19       Impact factor: 11.205

4.  A satellite-like sequence, representing a "clone gap" in the human genome, was likely involved in the seeding of a novel centromere in macaque.

Authors:  Lucia Carbone; Pietro D'addabbo; Maria Francesca Cardone; Maria Grazia Teti; Doriana Misceo; Gery M Vessere; Pieter J de Jong; Mariano Rocchi
Journal:  Chromosoma       Date:  2008-12-02       Impact factor: 4.316

5.  Radial chromatin positioning is shaped by local gene density, not by gene expression.

Authors:  Katrin Küpper; Alexandra Kölbl; Dorothee Biener; Sandra Dittrich; Johann von Hase; Tobias Thormeyer; Heike Fiegler; Nigel P Carter; Michael R Speicher; Thomas Cremer; Marion Cremer
Journal:  Chromosoma       Date:  2007-02-27       Impact factor: 4.316

6.  Little ROCK is a ROCK1 pseudogene expressed in human smooth muscle cells.

Authors:  Maria Claudia Montefusco; Kristen Merlo; Crystal D Bryan; Howard K Surks; Steven E Reis; Michael E Mendelsohn; Gordon S Huggins
Journal:  BMC Genet       Date:  2010-04-14       Impact factor: 2.797

7.  Autosomal linkage analysis for cannabis use behaviors in Australian adults.

Authors:  Arpana Agrawal; Katherine I Morley; Narelle K Hansell; Michele L Pergadia; Grant W Montgomery; Dixie J Statham; Richard D Todd; Pamela A F Madden; Andrew C Heath; John Whitfield; Nicholas G Martin; Michael T Lynskey
Journal:  Drug Alcohol Depend       Date:  2008-07-07       Impact factor: 4.492

8.  Establishment of a human trisomy 18 induced pluripotent stem cell line from amniotic fluid cells.

Authors:  Kaixuan Xing; Yazhou Cui; Jing Luan; Xiaoyan Zhou; Liang Shi; Jinxiang Han
Journal:  Intractable Rare Dis Res       Date:  2018-05

9.  DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage.

Authors:  Michael C Zody; Manuel Garber; David J Adams; Ted Sharpe; Jennifer Harrow; James R Lupski; Christine Nicholson; Steven M Searle; Laurens Wilming; Sarah K Young; Amr Abouelleil; Nicole R Allen; Weimin Bi; Toby Bloom; Mark L Borowsky; Boris E Bugalter; Jonathan Butler; Jean L Chang; Chao-Kung Chen; April Cook; Benjamin Corum; Christina A Cuomo; Pieter J de Jong; David DeCaprio; Ken Dewar; Michael FitzGerald; James Gilbert; Richard Gibson; Sante Gnerre; Steven Goldstein; Darren V Grafham; Russell Grocock; Nabil Hafez; Daniel S Hagopian; Elizabeth Hart; Catherine Hosage Norman; Sean Humphray; David B Jaffe; Matt Jones; Michael Kamal; Varsha K Khodiyar; Kurt LaButti; Gavin Laird; Jessica Lehoczky; Xiaohong Liu; Tashi Lokyitsang; Jane Loveland; Annie Lui; Pendexter Macdonald; John E Major; Lucy Matthews; Evan Mauceli; Steven A McCarroll; Atanas H Mihalev; Jonathan Mudge; Cindy Nguyen; Robert Nicol; Sinéad B O'Leary; Kazutoyo Osoegawa; David C Schwartz; Charles Shaw-Smith; Pawel Stankiewicz; Charles Steward; David Swarbreck; Vijay Venkataraman; Charles A Whittaker; Xiaoping Yang; Andrew R Zimmer; Allan Bradley; Tim Hubbard; Bruce W Birren; Jane Rogers; Eric S Lander; Chad Nusbaum
Journal:  Nature       Date:  2006-04-20       Impact factor: 49.962

10.  Organizational heterogeneity of vertebrate genomes.

Authors:  Svetlana Frenkel; Valery Kirzhner; Abraham Korol
Journal:  PLoS One       Date:  2012-02-27       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.