Literature DB >> 16177139

Competition of PTB with TIA proteins for binding to a U-rich cis-element determines tissue-specific splicing of the myosin phosphatase targeting subunit 1.

Supriya Shukla1, Fabienne Del Gatto-Konczak, Richard Breathnach, Steven A Fisher.   

Abstract

A considerable amount of smooth muscle phenotypic diversity is generated by tissue-specific and developmentally regulated splicing of alternative exons. The control mechanisms are unknown. We are using a myosin phosphatase targeting subunit-1 (MYPT1) alternative exon as a model to investigate this question. In the present study, we show that the RNA binding proteins TIA and PTB function as antagonistic enhancers and suppressors of splicing of the alternative exon, respectively. Each functions through a single U-rich element, containing two UCUU motifs, just downstream of the alternative exon 5' splice site. Tissue-specific down-regulation of TIA protein in the perinatal period allows PTB to bind to the U-rich element and suppress splicing of the alternative exon as the visceral smooth muscle acquires the fast-phasic smooth muscle contractile phenotype. This provides a novel role for PTB in the tissue-specific regulation of splicing of alternative exons during the generation of smooth muscle phenotypic diversity.

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Year:  2005        PMID: 16177139      PMCID: PMC1370859          DOI: 10.1261/rna.7176605

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  58 in total

1.  Characterization of promoter function and cell-type-specific expression from viral vectors in the nervous system.

Authors:  R L Smith; D L Traul; J Schaack; G H Clayton; K J Staley; C L Wilcox
Journal:  J Virol       Date:  2000-12       Impact factor: 5.103

Review 2.  Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology.

Authors:  D L Black
Journal:  Cell       Date:  2000-10-27       Impact factor: 41.582

3.  The RNA-binding protein TIA-1 is a novel mammalian splicing regulator acting through intron sequences adjacent to a 5' splice site.

Authors:  F Del Gatto-Konczak; C F Bourgeois; C Le Guiner; L Kister; M C Gesnel; J Stévenin; R Breathnach
Journal:  Mol Cell Biol       Date:  2000-09       Impact factor: 4.272

4.  The CELF family of RNA binding proteins is implicated in cell-specific and developmentally regulated alternative splicing.

Authors:  A N Ladd; N Charlet; T A Cooper
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

5.  Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity.

Authors:  D Schmucker; J C Clemens; H Shu; C A Worby; J Xiao; M Muda; J E Dixon; S L Zipursky
Journal:  Cell       Date:  2000-06-09       Impact factor: 41.582

6.  TIA-1 is a translational silencer that selectively regulates the expression of TNF-alpha.

Authors:  M Piecyk; S Wax; A R Beck; N Kedersha; M Gupta; B Maritim; S Chen; C Gueydan; V Kruys; M Streuli; P Anderson
Journal:  EMBO J       Date:  2000-08-01       Impact factor: 11.598

7.  Determinants of the contractile properties in the embryonic chicken gizzard and aorta.

Authors:  O Ogut; F V Brozovich
Journal:  Am J Physiol Cell Physiol       Date:  2000-12       Impact factor: 4.249

8.  Expression of the splicing regulator polypyrimidine tract-binding protein in normal and neoplastic brain.

Authors:  Ian E McCutcheon; Stephen J Hentschel; Gregory N Fuller; Wei Jin; Gilbert J Cote
Journal:  Neuro Oncol       Date:  2004-01       Impact factor: 12.300

9.  Dynamic shuttling of TIA-1 accompanies the recruitment of mRNA to mammalian stress granules.

Authors:  N Kedersha; M R Cho; W Li; P W Yacono; S Chen; N Gilks; D E Golan; P Anderson
Journal:  J Cell Biol       Date:  2000-12-11       Impact factor: 10.539

10.  RNA-binding proteins TIA-1 and TIAR link the phosphorylation of eIF-2 alpha to the assembly of mammalian stress granules.

Authors:  N L Kedersha; M Gupta; W Li; I Miller; P Anderson
Journal:  J Cell Biol       Date:  1999-12-27       Impact factor: 10.539

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  15 in total

Review 1.  Vascular smooth muscle phenotypic diversity and function.

Authors:  Steven A Fisher
Journal:  Physiol Genomics       Date:  2010-08-24       Impact factor: 3.107

2.  A nuclear function of Hu proteins as neuron-specific alternative RNA processing regulators.

Authors:  Hui Zhu; Robert A Hasman; Victoria A Barron; Guangbin Luo; Hua Lou
Journal:  Mol Biol Cell       Date:  2006-10-11       Impact factor: 4.138

3.  Uncoupling of expression of an intronic microRNA and its myosin host gene by exon skipping.

Authors:  Matthew L Bell; Massimo Buvoli; Leslie A Leinwand
Journal:  Mol Cell Biol       Date:  2010-02-12       Impact factor: 4.272

4.  Protein 4.1R Exon 16 3' Splice Site Activation Requires Coordination among TIA1, Pcbp1, and RBM39 during Terminal Erythropoiesis.

Authors:  Shu-Ching Huang; Henry S Zhang; Brian Yu; Ellen McMahon; Dan T Nguyen; Faye H Yu; Alexander C Ou; Jennie Park Ou; Edward J Benz
Journal:  Mol Cell Biol       Date:  2017-04-14       Impact factor: 4.272

Review 5.  Function of alternative splicing.

Authors:  Olga Kelemen; Paolo Convertini; Zhaiyi Zhang; Yuan Wen; Manli Shen; Marina Falaleeva; Stefan Stamm
Journal:  Gene       Date:  2012-08-15       Impact factor: 3.688

6.  A systematic analysis of intronic sequences downstream of 5' splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation.

Authors:  Isabel Aznarez; Yoseph Barash; Ofer Shai; David He; Julian Zielenski; Lap-Chee Tsui; John Parkinson; Brendan J Frey; Johanna M Rommens; Benjamin J Blencowe
Journal:  Genome Res       Date:  2008-05-02       Impact factor: 9.043

7.  Tra2beta as a novel mediator of vascular smooth muscle diversification.

Authors:  Supriya Shukla; Steven A Fisher
Journal:  Circ Res       Date:  2008-07-31       Impact factor: 17.367

8.  Structure of the central RNA recognition motif of human TIA-1 at 1.95A resolution.

Authors:  Amit O Kumar; Matthew C Swenson; Matthew M Benning; Clara L Kielkopf
Journal:  Biochem Biophys Res Commun       Date:  2008-01-15       Impact factor: 3.575

9.  Mutation of mapped TIA-1/TIAR binding sites in the 3' terminal stem-loop of West Nile virus minus-strand RNA in an infectious clone negatively affects genomic RNA amplification.

Authors:  Mohamed M Emara; Hsuan Liu; William G Davis; Margo A Brinton
Journal:  J Virol       Date:  2008-09-03       Impact factor: 5.103

10.  The pivotal roles of TIA proteins in 5' splice-site selection of alu exons and across evolution.

Authors:  Nurit Gal-Mark; Schraga Schwartz; Oren Ram; Eduardo Eyras; Gil Ast
Journal:  PLoS Genet       Date:  2009-11-13       Impact factor: 5.917

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