Literature DB >> 16172677

Nucleoside 5'-triphosphates: self-association, acid-base, and metal ion-binding properties in solution.

Helmut Sigel1, Rolf Griesser.   

Abstract

Adenosine 5'-triphosphate (ATP(4-)) and related nucleoside 5'-triphosphates (NTP(4-)) serve as substrates in the form of metal ion complexes in enzymic reactions taking part thus in central metabolic processes. With this in mind, the coordination chemistry of NTPs is critically reviewed and the conditions are defined for studies aiming to describe the properties of monomeric complexes because at higher concentrations (>1 mM) self-stacking may take place. The metal ion (M(2+)) complexes of purine-NTPs are more stable than those of pyrimidine-NTPs; this stability enhancement is attributed, in accord with NMR studies, to macrochelate formation of the phosphate-coordinated M(2+) with N7 of the purine residue and the formation degrees of the resulting isomeric complexes are listed. Furthermore, the formation of mixed-ligand complexes (including also those with buffer molecules), the effect of a reduced solvent polarity on complex stability and structure (giving rise to selectivity), the use of nucleotide analogues as antiviral agents, and the effect of metal ions on group transfer reactions are summarized.

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Year:  2005        PMID: 16172677     DOI: 10.1039/b505986k

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  38 in total

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2.  Solution structure and metal ion binding sites of the human CPEB3 ribozyme's P4 domain.

Authors:  Miriam Skilandat; Magdalena Rowinska-Zyrek; Roland K O Sigel
Journal:  J Biol Inorg Chem       Date:  2014-03-21       Impact factor: 3.358

3.  Incorrect nucleotide insertion at the active site of a G:A mismatch catalyzed by DNA polymerase beta.

Authors:  Ping Lin; Vinod K Batra; Lars C Pedersen; William A Beard; Samuel H Wilson; Lee G Pedersen
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-07       Impact factor: 11.205

4.  Energy analysis of chemistry for correct insertion by DNA polymerase beta.

Authors:  Ping Lin; Lars C Pedersen; Vinod K Batra; William A Beard; Samuel H Wilson; Lee G Pedersen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-28       Impact factor: 11.205

5.  Metal-ion-dependent folding of a uranyl-specific DNAzyme: insight into function from fluorescence resonance energy transfer studies.

Authors:  Ying He; Yi Lu
Journal:  Chemistry       Date:  2011-11-03       Impact factor: 5.236

6.  Celebrating Helmut Sigel.

Authors:  Eva Freisinger; Roland K O Sigel
Journal:  J Biol Inorg Chem       Date:  2018-01       Impact factor: 3.358

7.  Elucidation of spermidine interaction with nucleotide ATP by multiple NMR techniques.

Authors:  Zhiyan Song; Kari J Parker; Idorenyin Enoh; Hua Zhao; Olarongbe Olubajo
Journal:  Magn Reson Chem       Date:  2010-02       Impact factor: 2.447

8.  Direct sensing of intracellular pH by the cystic fibrosis transmembrane conductance regulator (CFTR) Cl- channel.

Authors:  Jeng-Haur Chen; Zhiwei Cai; David N Sheppard
Journal:  J Biol Chem       Date:  2009-12-18       Impact factor: 5.157

9.  Quantum mechanics/molecular mechanics investigation of the chemical reaction in Dpo4 reveals water-dependent pathways and requirements for active site reorganization.

Authors:  Yanli Wang; Tamar Schlick
Journal:  J Am Chem Soc       Date:  2008-09-12       Impact factor: 15.419

10.  Characterizing multiple metal ion binding sites within a ribozyme by cadmium-induced EPR silencing.

Authors:  Natalia Kisseleva; Stefanie Kraut; Andres Jäschke; Olav Schiemann
Journal:  HFSP J       Date:  2007-07-27
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