Literature DB >> 1617139

Potentiostatic deposition of DNA for scanning probe microscopy.

S M Lindsay1, N J Tao, J A DeRose, P I Oden, R E Harrington, L Shlyakhtenko.   

Abstract

We describe a procedure for reversible adsorption of DNA onto a gold electrode maintained under potential control. The adsorbate can be imaged by scanning probe microscopy in situ. Quantitative control of a molecular adsorbate for microscopy is now possible. We found a potential window (between 0 and 180 mV versus a silver wire quasi reference) over which a gold (111) surface under phosphate buffer is positively charged, but is not covered with a dense adsorbate. When DNA is present in these conditions, molecules adsorb onto the electrode and remain stable under repeated scanning with a scanning tunneling microscope (STM). They become removed when the surface is brought to a negative charge. When operated at tunnel currents below approximately 0.4 nA, the STM yields a resolution of approximately 1 nm, which is better than can be obtained with atomic force microscopy (AFM) at present. We illustrate this procedure by imaging a series of DNA molecules made by ligating a 21 base-pair oligonucleotide. We observed the expected series of fragment lengths but small fragments are adsorbed preferentially.

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Year:  1992        PMID: 1617139      PMCID: PMC1260451          DOI: 10.1016/S0006-3495(92)81961-6

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  17 in total

1.  Circular DNA molecules imaged in air by scanning force microscopy.

Authors:  C Bustamante; J Vesenka; C L Tang; W Rees; M Guthold; R Keller
Journal:  Biochemistry       Date:  1992-01-14       Impact factor: 3.162

2.  Electrochemical deposition of molecular adsorbates for in situ scanning probe microscopy.

Authors:  L A Nagahara; T Thundat; P I Oden; S M Lindsay; R L Rill
Journal:  Ultramicroscopy       Date:  1990-08       Impact factor: 2.689

3.  Scanning tunneling microscopy and spectroscopy of plasmid DNA.

Authors:  D P Allison; J R Thompson; K B Jacobson; R J Warmack; T L Ferrell
Journal:  Scanning Microsc       Date:  1990-09

4.  Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles.

Authors:  A Bolshoy; P McNamara; R E Harrington; E N Trifonov
Journal:  Proc Natl Acad Sci U S A       Date:  1991-03-15       Impact factor: 11.205

5.  Molecular structure of DNA by scanning tunneling microscopy.

Authors:  A Cricenti; S Selci; A C Felici; R Generosi; E Gori; W Djaczenko; G Chiarotti
Journal:  Science       Date:  1989-09-15       Impact factor: 47.728

6.  Images of the DNA double helix in water.

Authors:  S M Lindsay; T Thundat; L Nagahara; U Knipping; R L Rill
Journal:  Science       Date:  1989-06-02       Impact factor: 47.728

7.  DNA bending induced by Cro protein binding as demonstrated by gel electrophoresis.

Authors:  Y Lyubchenko; L Shlyakhtenko; B Chernov; R E Harrington
Journal:  Proc Natl Acad Sci U S A       Date:  1991-06-15       Impact factor: 11.205

8.  Scanning tunneling microscopy of uncoated recA-DNA complexes.

Authors:  M Amrein; R Dürr; A Stasiak; H Gross; G Travaglini
Journal:  Science       Date:  1989-03-31       Impact factor: 47.728

9.  Mechanism of oligonucleotide loop formation in solution.

Authors:  S Roy; S Weinstein; B Borah; J Nickol; E Appella; J L Sussman; M Miller; H Shindo; J S Cohen
Journal:  Biochemistry       Date:  1986-11-18       Impact factor: 3.162

10.  Sequence, packing and nanometer scale structure in STM images of nucleic acids under water.

Authors:  S M Lindsay; L A Nagahara; T Thundat; P Oden
Journal:  J Biomol Struct Dyn       Date:  1989-10
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  11 in total

1.  Attaching molecules to surfaces for scanning probe microscopy.

Authors:  D Keller; C Bustamante
Journal:  Biophys J       Date:  1993-03       Impact factor: 4.033

2.  An approach to long-range electron transfer mechanisms in metalloproteins: in situ scanning tunneling microscopy with submolecular resolution.

Authors:  E P Friis; J E Andersen; Y I Kharkats; A M Kuznetsov; R J Nichols; J D Zhang; J Ulstrup
Journal:  Proc Natl Acad Sci U S A       Date:  1999-02-16       Impact factor: 11.205

3.  Moving Electrons Purposefully through Single Molecules and Nanostructures: A Tribute to the Science of Professor Nongjian Tao (1963-2020).

Authors:  Erica S Forzani; Huixin He; Joshua Hihath; Stuart Lindsay; Reginald M Penner; Shaopeng Wang; Bingqian Xu
Journal:  ACS Nano       Date:  2020-09-17       Impact factor: 15.881

4.  Structure of hydrated oligonucleotides studied by in situ scanning tunneling microscopy.

Authors:  T W Jing; A M Jeffrey; J A DeRose; Y L Lyubchenko; L S Shlyakhtenko; R E Harrington; E Appella; J Larsen; A Vaught; D Rekesh
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-01       Impact factor: 11.205

5.  Atomic force microscopy of long DNA: imaging in air and under water.

Authors:  Y Lyubchenko; L Shlyakhtenko; R Harrington; P Oden; S Lindsay
Journal:  Proc Natl Acad Sci U S A       Date:  1993-03-15       Impact factor: 11.205

6.  Atomic force microscopy of DNA and bacteriophage in air, water and propanol: the role of adhesion forces.

Authors:  Y L Lyubchenko; P I Oden; D Lampner; S M Lindsay; K A Dunker
Journal:  Nucleic Acids Res       Date:  1993-03-11       Impact factor: 16.971

7.  Identification of DNA--cisplatin adducts in a blind trial of in situ scanning tunneling microscopy.

Authors:  A M Jeffrey; T W Jing; J A DeRose; A Vaught; D Rekesh; F X Lu; S M Lindsay
Journal:  Nucleic Acids Res       Date:  1993-12-25       Impact factor: 16.971

8.  Following the assembly of RNA polymerase-DNA complexes in aqueous solutions with the scanning force microscope.

Authors:  M Guthold; M Bezanilla; D A Erie; B Jenkins; H G Hansma; C Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  1994-12-20       Impact factor: 11.205

9.  Masking generates contiguous segments of metal-coated and bare DNA for scanning tunneling microscope imaging.

Authors:  D D Dunlap; R García; E Schabtach; C Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-15       Impact factor: 11.205

Review 10.  Imaging of nucleic acids with atomic force microscopy.

Authors:  Yuri L Lyubchenko; Luda S Shlyakhtenko; Toshio Ando
Journal:  Methods       Date:  2011-02-16       Impact factor: 3.608

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