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Literature DB >> 16170870

Computational screening of conserved genomic DNA in search of functional noncoding elements.

Gill Bejerano¹, Adam C Siepel, W James Kent, David Haussler.

Abstract

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Year: 2005 PMID： 16170870 DOI： 10.1038/nmeth0705-535

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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27 in total

1. Identification of a dopaminergic enhancer indicates complexity in vertebrate dopamine neuron phenotype specification.

Authors: Esther Fujimoto; Tamara J Stevenson; Chi-Bin Chien; Joshua L Bonkowsky
Journal: Dev Biol Date: 2011-01-27 Impact factor: 3.582

Review 2. Enhancer identification through comparative genomics.

Authors: Axel Visel; James Bristow; Len A Pennacchio
Journal: Semin Cell Dev Biol Date: 2007-01-05 Impact factor: 7.727

3. Arabidopsis intragenomic conserved noncoding sequence.

Authors: Brian C Thomas; Lakshmi Rapaka; Eric Lyons; Brent Pedersen; Michael Freeling
Journal: Proc Natl Acad Sci U S A Date: 2007-02-14 Impact factor: 11.205

4. G-boxes, bigfoot genes, and environmental response: characterization of intragenomic conserved noncoding sequences in Arabidopsis.

Authors: Michael Freeling; Lakshmi Rapaka; Eric Lyons; Brent Pedersen; Brian C Thomas
Journal: Plant Cell Date: 2007-05-11 Impact factor: 11.277

5. In silico evolution of the hunchback gene indicates redundancy in cis-regulatory organization and spatial gene expression.

Authors: Elizaveta A Zagrijchuk; Marat A Sabirov; David M Holloway; Alexander V Spirov
Journal: J Bioinform Comput Biol Date: 2014-03-25 Impact factor: 1.122

Computational screening of conserved genomic DNA in search of functional noncoding elements.

1. Identification of a dopaminergic enhancer indicates complexity in vertebrate dopamine neuron phenotype specification.

Review 2. Enhancer identification through comparative genomics.

3. Arabidopsis intragenomic conserved noncoding sequence.

4. G-boxes, bigfoot genes, and environmental response: characterization of intragenomic conserved noncoding sequences in Arabidopsis.

5. In silico evolution of the hunchback gene indicates redundancy in cis-regulatory organization and spatial gene expression.

6. The UCSC Genome Browser.

7. Genome-wide identification of replication origins in yeast by comparative genomics.

8. The UCSC Genome Browser.

9. Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.

10. A transposon-based chromosomal engineering method to survey a large cis-regulatory landscape in mice.