Literature DB >> 1616693

The segmented anisotropic refinement of monoclinic papain by the application of the rigid-body TLS model and comparison to bovine ribonuclease A.

G W Harris1, R W Pickersgill, B Howlin, D S Moss.   

Abstract

The anisotropic displacements of selected rigid groups in monoclinic papain have been refined from X-ray diffraction data by application of the rigid-body TLS model. The rigid groups chosen were the aromatic side chains of tryptophan, tyrosine, histidine and phenylalanine, and the planar carboxylic and guanidinium side chains of aspartic acid, glutamic acid, glutamine, asparagine and arginine. The derived translation and libration tensors have been compared with those previously derived for bovine ribonuclease A and provide evidence for different modes and anisotropies of displacement over the two proteins.

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Year:  1992        PMID: 1616693     DOI: 10.1107/s0108768191006663

Source DB:  PubMed          Journal:  Acta Crystallogr B        ISSN: 0108-7681


  9 in total

1.  The molecular basis of allergenicity: comparative analysis of the three dimensional structures of diverse allergens reveals a common structural motif.

Authors:  R Furmonaviciene; F Shakib
Journal:  Mol Pathol       Date:  2001-06

2.  Evaluation of hydrogen-bonding and enantiomeric P2-S2 hydrophobic contacts in dynamic aspects of molecular recognition by papain.

Authors:  M Patel; I S Kayani; W Templeton; G W Mellor; E W Thomas; K Brocklehurst
Journal:  Biochem J       Date:  1992-11-01       Impact factor: 3.857

3.  Mapping protein pockets through their potential small-molecule binding volumes: QSCD applied to biological protein structures.

Authors:  Keith Mason; Nehal M Patel; Aric Ledel; Ciamac C Moallemi; Edward A Wintner
Journal:  J Comput Aided Mol Des       Date:  2004-01       Impact factor: 3.686

4.  Thiols and selenols as electron-relay catalysts for disulfide-bond reduction.

Authors:  John C Lukesh; Brett Vanveller; Ronald T Raines
Journal:  Angew Chem Int Ed Engl       Date:  2013-10-10       Impact factor: 15.336

5.  Ionization characteristics of the Cys-25/His-159 interactive system and of the modulatory group of papain: resolution of ambiguity by electronic perturbation of the quasi-2-mercaptopyridine leaving group in a new pyrimidyl disulphide reactivity probe.

Authors:  G W Mellor; E W Thomas; C M Topham; K Brocklehurst
Journal:  Biochem J       Date:  1993-02-15       Impact factor: 3.857

6.  TLS from fundamentals to practice.

Authors:  Alexandre Urzhumtsev; Pavel V Afonine; Paul D Adams
Journal:  Crystallogr Rev       Date:  2013-07-01       Impact factor: 2.467

7.  Atomic-accuracy prediction of protein loop structures through an RNA-inspired Ansatz.

Authors:  Rhiju Das
Journal:  PLoS One       Date:  2013-10-21       Impact factor: 3.240

8.  A human RNA viral cysteine proteinase that depends upon a unique Zn2+-binding finger connecting the two domains of a papain-like fold .

Authors:  J Herold; S G Siddell; A E Gorbalenya
Journal:  J Biol Chem       Date:  1999-05-21       Impact factor: 5.157

9.  From deep TLS validation to ensembles of atomic models built from elemental motions.

Authors:  Alexandre Urzhumtsev; Pavel V Afonine; Andrew H Van Benschoten; James S Fraser; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-07-28
  9 in total

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