Literature DB >> 16164334

Forced Kramers escape in single-molecule pulling experiments.

Yu-Jane Sheng1, Shaoyi Jiang, Heng-Kwong Tsao.   

Abstract

The pulling-induced rupture of noncovalent bonds is studied by the overdamped Kramers theory with full account of a time-varying barrier. Mechanic pulling reduces the energy barrier and leads to loading-rate dependence of the rupture force F(u)(F(t)). Tested against Langevin dynamics, four distinct regimes are identified, including kinetic dominant, weak pulling, strong pulling, and mechanic pulling dominant. Asymptotic analyses show that F(u) approximately ln F(t) in weak pulling regime and becomes 1-(F(u)F(c)) approximately [ln(F(t))E(b)](23) in strong pulling regime. Kinetic informations such as activation energy E(b) and critical force F(c) were extracted from pulling experiments for biotin-streptavidin complex.

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Year:  2005        PMID: 16164334     DOI: 10.1063/1.2046632

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Affinity-matured recombinant antibody fragments analyzed by single-molecule force spectroscopy.

Authors:  Julia Morfill; Kerstin Blank; Christian Zahnd; Beatrice Luginbühl; Ferdinand Kühner; Kay-E Gottschalk; Andreas Plückthun; Hermann E Gaub
Journal:  Biophys J       Date:  2007-08-03       Impact factor: 4.033

2.  Effects of multiple-bond ruptures on kinetic parameters extracted from force spectroscopy measurements: revisiting biotin-streptavidin interactions.

Authors:  Senli Guo; Chad Ray; Andrea Kirkpatrick; Nimit Lad; Boris B Akhremitchev
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

3.  Multiple barriers in forced rupture of protein complexes.

Authors:  Changbong Hyeon; D Thirumalai
Journal:  J Chem Phys       Date:  2012-08-07       Impact factor: 3.488

4.  Stochastic simulation of single-molecule pulling experiments.

Authors:  V K Gupta
Journal:  Eur Phys J E Soft Matter       Date:  2014-10-28       Impact factor: 1.890

  4 in total

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