Literature DB >> 16164294

Dynamical effects on vibrational and electronic spectra of hydroperoxyl radical water clusters.

Srinivasan S Iyengar1.   

Abstract

We have carried out ab initio molecular-dynamics studies on hydroperoxyl water clusters. Our studies are complemented by optimization, frequency, and excited-state calculations. The three main results we obtained are (a) the dynamically averaged energy gap between the highest-occupied molecular orbital and the lowest-unoccupied molecular orbital monotonically decreases as the number of water molecules is increased in a hydroperoxyl water cluster system, (b) the dynamical averaging of the potential-energy surface at finite temperature broadens the electronic excitation spectrum and changes the infrared spectrum in nontrivial ways, and (c) the structural analysis of our dynamics simulation indicates that the oxygen-oxygen distance in a solvated hydroperoxyl-water cluster is very similar to that found in protonated water clusters (Zundel: H5O2+) inspite of the fact that the latter possesses a positive charge and the hydroperoxyl-water cluster does not. Dynamical charge analysis and the weak acidity of HO2 are used to justify this result.

Entities:  

Year:  2005        PMID: 16164294     DOI: 10.1063/1.2006674

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Real-time molecular monitoring of chemical environment in obligate anaerobes during oxygen adaptive response.

Authors:  Hoi-Ying N Holman; Eleanor Wozei; Zhang Lin; Luis R Comolli; David A Ball; Sharon Borglin; Matthew W Fields; Terry C Hazen; Kenneth H Downing
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-16       Impact factor: 11.205

2.  Interactions of CO2 Anion Radicals with Electrolyte Environments from First-Principles Simulations.

Authors:  Morgan M Cencer; Chenyang Li; Garvit Agarwal; Reginaldo Jose Gomes Neto; Chibueze V Amanchukwu; Rajeev S Assary
Journal:  ACS Omega       Date:  2022-05-17

3.  Gauging the flexibility of the active site in soybean lipoxygenase-1 (SLO-1) through an atom-centered density matrix propagation (ADMP) treatment that facilitates the sampling of rare events.

Authors:  Prasad Phatak; Isaiah Sumner; Srinivasan S Iyengar
Journal:  J Phys Chem B       Date:  2012-08-17       Impact factor: 2.991

4.  Extension of the AMBER Force Field for Nitroxide Radicals and Combined QM/MM/PCM Approach to the Accurate Determination of EPR Parameters of DMPO-H in Solution.

Authors:  Laura Hermosilla; Giacomo Prampolini; Paloma Calle; José Manuel García de la Vega; Giuseppe Brancato; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2013-07-15       Impact factor: 6.006

  4 in total

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