Literature DB >> 16161617

The shape of a flexible polymer in a cylindrical pore.

G Morrison1, D Thirumalai.   

Abstract

We calculate the mean end-to-end distance R of a self-avoiding polymer encapsulated in an infinitely long cylinder with radius D. A self-consistent perturbation theory is used to calculate R as a function of D for impenetrable hard walls and soft walls. In both cases, R obeys the predicted scaling behavior in the limit of large and small D. The crossover from the three-dimensional behavior (D --> infinity) to the fully stretched one-dimensional case (D --> 0) is nonmonotonic. The minimum value of R is found at D approximately 0.46R(F), where R(F) is the Flory radius of R at D --> infinity. The results for soft walls map onto the hard wall case with a larger cylinder radius.

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Year:  2005        PMID: 16161617     DOI: 10.1063/1.1903923

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  As a Nucleus Enters a Small Pore, Chromatin Stretches and Maintains Integrity, Even with DNA Breaks.

Authors:  Jerome Irianto; Yuntao Xia; Charlotte R Pfeifer; Roger A Greenberg; Dennis E Discher
Journal:  Biophys J       Date:  2016-10-27       Impact factor: 4.033

2.  The entropic cost of polymer confinement.

Authors:  Mark R Smyda; Stephen C Harvey
Journal:  J Phys Chem B       Date:  2012-08-27       Impact factor: 2.991

3.  Factors governing helix formation in peptides confined to carbon nanotubes.

Authors:  Edward P O'Brien; George Stan; D Thirumalai; Bernard R Brooks
Journal:  Nano Lett       Date:  2008-09-26       Impact factor: 11.189

4.  Trigger factor chaperone acts as a mechanical foldase.

Authors:  Shubhasis Haldar; Rafael Tapia-Rojo; Edward C Eckels; Jessica Valle-Orero; Julio M Fernandez
Journal:  Nat Commun       Date:  2017-09-22       Impact factor: 14.919

  4 in total

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