Literature DB >> 16159790

Evolutionary and diagnostic implications of intragenomic heterogeneity in the 16S rRNA gene in Aeromonas strains.

Alessia Morandi1, Olga Zhaxybayeva, J Peter Gogarten, Joerg Graf.   

Abstract

Sequencing 16S rRNA genes (SSU) cloned from Aeromonas strains revealed that strains contained up to six copies differing by < or = 1.5%. The SSU copies from Aeromonas veronii LMG13695 clustered with sequences from four Aeromonas species. These results demonstrate intragenomic heterogeneity of SSU and suggest caution when using SSU to identify aeromonads.

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Year:  2005        PMID： 16159790      PMCID： PMC1236645          DOI： 10.1128/JB.187.18.6561-6564.2005

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  28 in total

1.  Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes.

Authors:  Tom Coenye; Peter Vandamme
Journal:  FEMS Microbiol Lett       Date:  2003-11-07       Impact factor: 2.742

2.  Multilocus enzyme analysis of the genus Aeromonas and its use for species identification.

Authors:  M Altwegg; M W Reeves; R Altwegg-Bissig; D J Brenner
Journal:  Zentralbl Bakteriol       Date:  1991-04

3.  Symbiosis of Aeromonas veronii biovar sobria and Hirudo medicinalis, the medicinal leech: a novel model for digestive tract associations.

Authors:  J Graf
Journal:  Infect Immun       Date:  1999-01       Impact factor: 3.441

4.  Identification of Aeromonas clinical isolates by restriction fragment length polymorphism of PCR-amplified 16S rRNA genes.

Authors:  N Borrell; S G Acinas; M J Figueras; A J Martínez-Murcia
Journal:  J Clin Microbiol       Date:  1997-07       Impact factor: 5.948

5.  Molecular evolution of Mycoplasma capricolum subsp. capripneumoniae strains, based on polymorphisms in the 16S rRNA genes.

Authors:  B Pettersson; G Bölske; F Thiaucourt; M Uhlén; K E Johansson
Journal:  J Bacteriol       Date:  1998-05       Impact factor: 3.490

6.  Evidence from Aeromonas for genetic crossing-over in ribosomal sequences.

Authors:  P H Sneath
Journal:  Int J Syst Bacteriol       Date:  1993-07

7.  Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods.

Authors:  Z Yang
Journal:  J Mol Evol       Date:  1994-09       Impact factor: 2.395

Review 8.  Analysis of genetic variation by polymerase chain reaction-based nucleotide sequencing.

Authors:  K Nelson; R K Selander
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

9.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

Review 10.  Evolving concepts regarding the genus Aeromonas: an expanding Panorama of species, disease presentations, and unanswered questions.

Authors:  J M Janda; S L Abbott
Journal:  Clin Infect Dis       Date:  1998-08       Impact factor: 9.079
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  33 in total

1.  Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events.

Authors:  Olga Zhaxybayeva; J Peter Gogarten; Robert L Charlebois; W Ford Doolittle; R Thane Papke
Journal:  Genome Res       Date:  2006-08-09       Impact factor: 9.043

2.  Identification of Aeromonas veronii genes required for colonization of the medicinal leech, Hirudo verbana.

Authors:  Adam C Silver; Natasha M Rabinowitz; Stefan Küffer; Joerg Graf
Journal:  J Bacteriol       Date:  2007-07-06       Impact factor: 3.490

3.  Characterization of the digestive-tract microbiota of Hirudo orientalis, a european medicinal leech.

Authors:  Alison S Laufer; Mark E Siddall; Joerg Graf
Journal:  Appl Environ Microbiol       Date:  2008-08-08       Impact factor: 4.792

4.  Evaluation of the MALDI-TOF MS profiling for identification of newly described Aeromonas spp.

Authors:  Andrea Vávrová; Tereza Balážová; Ivo Sedláček; Ludmila Tvrzová; Ondrej Šedo
Journal:  Folia Microbiol (Praha)       Date:  2014-12-19       Impact factor: 2.099

5.  Characterization of Aeromonas strains isolated from Indian foods using rpoD gene sequencing and whole cell protein analysis.

Authors:  Vandan Nagar; Ravindranath Shashidhar; Jayant R Bandekar
Journal:  World J Microbiol Biotechnol       Date:  2012-12-20       Impact factor: 3.312

6.  Genome-level homology and phylogeny of Shewanella (Gammaproteobacteria: lteromonadales: Shewanellaceae).

Authors:  Rebecca B Dikow
Journal:  BMC Genomics       Date:  2011-05-12       Impact factor: 3.969

7.  Determination of microbial diversity of Aeromonas strains on the basis of multilocus sequence typing, phenotype, and presence of putative virulence genes.

Authors:  Maria Elena Martino; Luca Fasolato; Filomena Montemurro; Marina Rosteghin; Amedeo Manfrin; Tomaso Patarnello; Enrico Novelli; Barbara Cardazzo
Journal:  Appl Environ Microbiol       Date:  2011-06-03       Impact factor: 4.792

8.  Genome sequence of Aeromonas hydrophila ATCC 7966T: jack of all trades.

Authors:  Rekha Seshadri; Sam W Joseph; Ashok K Chopra; Jian Sha; Jonathan Shaw; Joerg Graf; Daniel Haft; Martin Wu; Qinghu Ren; M J Rosovitz; Ramana Madupu; Luke Tallon; Mary Kim; Shaohua Jin; Hue Vuong; O Colin Stine; Afsar Ali; Amy J Horneman; John F Heidelberg
Journal:  J Bacteriol       Date:  2006-09-15       Impact factor: 3.490

Review 9.  The genus Aeromonas: taxonomy, pathogenicity, and infection.

Authors:  J Michael Janda; Sharon L Abbott
Journal:  Clin Microbiol Rev       Date:  2010-01       Impact factor: 26.132

10.  Intra- and intergenomic variation of ribosomal RNA operons in concurrent Alteromonas macleodii strains.

Authors:  Mario López-Pérez; Aitor Gonzaga; Ana-Belen Martin-Cuadrado; Purificación López-García; Francisco Rodriguez-Valera; Nikole E Kimes
Journal:  Microb Ecol       Date:  2012-12-28       Impact factor: 4.552
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