Literature DB >> 16159250

Molecular assembly of superquenchers in signaling molecular interactions.

Chaoyong James Yang1, Hui Lin, Weihong Tan.   

Abstract

We have designed a novel molecular assembly of quencher molecules to form superquenchers with excellent quenching efficiency. The superquencher can be engineered as desired by assembling different types and different numbers of quencher molecules. By labeling a superquencher to a molecular beacon, a 320-fold enhancement of fluorescent signal was achieved, compared to about 14-fold from a molecular beacon prepared with the same monomer quencher. Our molecular assembly approach can effectively improve the sensitivity of a variety of fluorescent assays and can be widely useful for molecular interaction studies.

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Year:  2005        PMID: 16159250      PMCID: PMC2536687          DOI: 10.1021/ja053482t

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  18 in total

1.  Hybridization-based unquenching of DNA hairpins on au surfaces: prototypical "molecular beacon" biosensors.

Authors:  Hui Du; Matthew D Disney; Benjamin L Miller; Todd D Krauss
Journal:  J Am Chem Soc       Date:  2003-04-09       Impact factor: 15.419

2.  A new dark quencher for use in genetic analysis.

Authors:  Jonathan P May; Lynda J Brown; Ivo Rudloff; Tom Brown
Journal:  Chem Commun (Camb)       Date:  2003-04-21       Impact factor: 6.222

3.  Solid-phase synthesis of multivalent glycoconjugates on a DNA synthesizer.

Authors:  Michael Dubber; Jean M J Fréchet
Journal:  Bioconjug Chem       Date:  2003 Jan-Feb       Impact factor: 4.774

Review 4.  Molecular beacons.

Authors:  Weihong Tan; Kemim Wang; Timothy J Drake
Journal:  Curr Opin Chem Biol       Date:  2004-10       Impact factor: 8.822

5.  Novel fluorogenic substrates for assaying retroviral proteases by resonance energy transfer.

Authors:  E D Matayoshi; G T Wang; G A Krafft; J Erickson
Journal:  Science       Date:  1990-02-23       Impact factor: 47.728

6.  Molecular beacons: probes that fluoresce upon hybridization.

Authors:  S Tyagi; F R Kramer
Journal:  Nat Biotechnol       Date:  1996-03       Impact factor: 54.908

7.  Oligonucleotide dendrimers: synthesis and use as polylabelled DNA probes.

Authors:  M S Shchepinov; I A Udalova; A J Bridgman; E M Southern
Journal:  Nucleic Acids Res       Date:  1997-11-15       Impact factor: 16.971

8.  Real-time detection of gene expression in cancer cells using molecular beacon imaging: new strategies for cancer research.

Authors:  Xiang-Hong Peng; Ze-Hong Cao; Jin-Tang Xia; Grant W Carlson; Melinda M Lewis; William C Wood; Lily Yang
Journal:  Cancer Res       Date:  2005-03-01       Impact factor: 12.701

9.  A novel anionic dendrimer for improved cellular delivery of antisense oligonucleotides.

Authors:  Majad Hussain; Mikhail Shchepinov; Muhammad Sohail; Ibrahim F Benter; Andrew J Hollins; Edwin M Southern; Saghir Akhtar
Journal:  J Control Release       Date:  2004-09-14       Impact factor: 9.776

10.  Detection of specific polymerase chain reaction product by utilizing the 5'----3' exonuclease activity of Thermus aquaticus DNA polymerase.

Authors:  P M Holland; R D Abramson; R Watson; D H Gelfand
Journal:  Proc Natl Acad Sci U S A       Date:  1991-08-15       Impact factor: 11.205

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  23 in total

1.  Double displacement: An improved bioorthogonal reaction strategy for templated nucleic acid detection.

Authors:  Daniel J Kleinbaum; Gregory P Miller; Eric T Kool
Journal:  Bioconjug Chem       Date:  2010-06-16       Impact factor: 4.774

2.  Efficient quenching of oligomeric fluorophores on a DNA backbone.

Authors:  James N Wilson; Yin Nah Teo; Eric T Kool
Journal:  J Am Chem Soc       Date:  2007-11-21       Impact factor: 15.419

Review 3.  Nucleic acid-based fluorescent probes and their analytical potential.

Authors:  Bernard Juskowiak
Journal:  Anal Bioanal Chem       Date:  2010-10-29       Impact factor: 4.142

4.  Molecular beacons in biomedical detection and clinical diagnosis.

Authors:  Youngmi Kim; Dosung Sohn; Weihong Tan
Journal:  Int J Clin Exp Pathol       Date:  2008-01-01

5.  Enzymatic amplification of DNA/RNA hybrid molecular beacon signaling in nucleic acid detection.

Authors:  Thomas Jacroux; Daniel C Rieck; Rong Cui; Yexin Ouyang; Wen-Ji Dong
Journal:  Anal Biochem       Date:  2012-09-19       Impact factor: 3.365

6.  Ag nanocluster-based label-free catalytic and molecular beacons for amplified biosensing.

Authors:  Liang Gong; Hailan Kuai; Songlei Ren; Xu-Hua Zhao; Shuang-Yan Huan; Xiao-Bing Zhang; Weihong Tan
Journal:  Chem Commun (Camb)       Date:  2015-08-04       Impact factor: 6.222

7.  Polyfluorophore labels on DNA: dramatic sequence dependence of quenching.

Authors:  Yin Nah Teo; James N Wilson; Eric T Kool
Journal:  Chemistry       Date:  2009-11-02       Impact factor: 5.236

8.  Slow non-specific accumulation of 2'-deoxy and 2'-O-methyl oligonucleotide probes at mitochondria in live cells.

Authors:  Won Jong Rhee; Gang Bao
Journal:  Nucleic Acids Res       Date:  2010-02-10       Impact factor: 16.971

9.  Pyrene excimer signaling molecular beacons for probing nucleic acids.

Authors:  Patrick Conlon; Chaoyong James Yang; Yanrong Wu; Yan Chen; Karen Martinez; Youngmi Kim; Nathan Stevens; Angel A Marti; Steffen Jockusch; Nicholas J Turro; Weihong Tan
Journal:  J Am Chem Soc       Date:  2007-12-14       Impact factor: 15.419

Review 10.  Fluorescent probes for live-cell RNA detection.

Authors:  Gang Bao; Won Jong Rhee; Andrew Tsourkas
Journal:  Annu Rev Biomed Eng       Date:  2009       Impact factor: 9.590

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