Literature DB >> 16153738

Genome-wide analysis of HDAC function.

Karl Ekwall1.   

Abstract

This article focuses on new developments in the genome-wide analysis of histone deacetylase (HDAC) function in yeast. HDACs are highly conserved in many organisms; therefore, their basic functions can be investigated using experimentally tractable model organisms, such as the budding yeast Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. New microarray techniques have enabled the systematic study of HDACs by identifying their direct and indirect gene targets in addition to their physiological functions and enzymatic specificity. These new approaches have already provided new surprising insights into the basic function of HDACs.

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Year:  2005        PMID: 16153738     DOI: 10.1016/j.tig.2005.08.009

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  50 in total

1.  Acetylation regulates monopolar attachment at multiple levels during meiosis I in fission yeast.

Authors:  Ayano Kagami; Takeshi Sakuno; Yuya Yamagishi; Tadashi Ishiguro; Tatsuya Tsukahara; Katsuhiko Shirahige; Koichi Tanaka; Yoshinori Watanabe
Journal:  EMBO Rep       Date:  2011-10-28       Impact factor: 8.807

2.  Genome-wide patterns of histone modifications in fission yeast.

Authors:  Indranil Sinha; Marianna Wirén; Karl Ekwall
Journal:  Chromosome Res       Date:  2006       Impact factor: 5.239

3.  Specific functions for the fission yeast Sirtuins Hst2 and Hst4 in gene regulation and retrotransposon silencing.

Authors:  Mickaël Durand-Dubief; Indranil Sinha; Fredrik Fagerström-Billai; Carolina Bonilla; Anthony Wright; Michael Grunstein; Karl Ekwall
Journal:  EMBO J       Date:  2007-04-19       Impact factor: 11.598

4.  Suppressor analysis of a histone defect identifies a new function for the hda1 complex in chromosome segregation.

Authors:  Hasna Kanta; Lisa Laprade; Abeer Almutairi; Inés Pinto
Journal:  Genetics       Date:  2006-01-16       Impact factor: 4.562

5.  HAT-HDAC interplay modulates global histone H3K14 acetylation in gene-coding regions during stress.

Authors:  Anna Johnsson; Mickaël Durand-Dubief; Yongtao Xue-Franzén; Michelle Rönnerblad; Karl Ekwall; Anthony Wright
Journal:  EMBO Rep       Date:  2009-07-24       Impact factor: 8.807

6.  Transformation/transcription domain-associated protein (TRRAP)-mediated regulation of Wee1.

Authors:  Teresa M Calonge; Majid Eshaghi; Jianhua Liu; Ze'ev Ronai; Matthew J O'Connell
Journal:  Genetics       Date:  2010-03-01       Impact factor: 4.562

7.  A role for mammalian Sin3 in permanent gene silencing.

Authors:  Chris van Oevelen; Jinhua Wang; Patrik Asp; Qin Yan; William G Kaelin; Yuval Kluger; Brian David Dynlacht
Journal:  Mol Cell       Date:  2008-11-07       Impact factor: 17.970

8.  The LIM protein AJUBA recruits protein arginine methyltransferase 5 to mediate SNAIL-dependent transcriptional repression.

Authors:  Zhaoyuan Hou; Hongzhuang Peng; Kasirajan Ayyanathan; Kai-Ping Yan; Ellen M Langer; Gregory D Longmore; Frank J Rauscher
Journal:  Mol Cell Biol       Date:  2008-03-17       Impact factor: 4.272

9.  Phylogenetic analysis of the SAP30 family of transcriptional regulators reveals functional divergence in the domain that binds the nuclear matrix.

Authors:  Keijo M Viiri; Taisto Y K Heinonen; Markku Mäki; Olli Lohi
Journal:  BMC Evol Biol       Date:  2009-06-30       Impact factor: 3.260

10.  Dual regulation by pairs of cyclin-dependent protein kinases and histone deacetylases controls G1 transcription in budding yeast.

Authors:  Dongqing Huang; Supipi Kaluarachchi; Dewald van Dyk; Helena Friesen; Richelle Sopko; Wei Ye; Nazareth Bastajian; Jason Moffat; Holly Sassi; Michael Costanzo; Brenda J Andrews
Journal:  PLoS Biol       Date:  2009-09-08       Impact factor: 8.029

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