| Literature DB >> 16144000 |
Giovanni Ciccotti1, Raymond Kapral, Eric Vanden-Eijnden.
Abstract
We give a new formula expressing the components of the mean force in terms of a conditional expectation which can be computed by Blue Moon sampling. This generalizes to the vectorial case a formula first derived by Ruiz-Montero et al. for a scalar reaction coordinate. We also discuss how to compute this conditional average by means of constrained stochastic dynamics which, unlike the usual constrained molecular dynamics, introduces no bias. Finally, we give a new perspective on bias removal by using constrained molecular dynamics.Year: 2005 PMID: 16144000 DOI: 10.1002/cphc.200400669
Source DB: PubMed Journal: Chemphyschem ISSN: 1439-4235 Impact factor: 3.102