Literature DB >> 16131206

Kinetic and spectroscopic characterization of ACMSD from Pseudomonas fluorescens reveals a pentacoordinate mononuclear metallocofactor.

Tingfeng Li1, Antoinette L Walker, Hiroaki Iwaki, Yoshie Hasegawa, Aimin Liu.   

Abstract

The enzyme alpha-amino-beta-carboxy-muconic-epsilon-semialdehyde decarboxylase (ACMSD) plays an important role in the biodegradation of 2-nitrobenzoic acid in microorganisms and in tryptophan catabolism in humans. We report that the overexpressed ACMSD enzyme from Pseudomonas fluorescens requires a divalent metal, such as Co(II), Fe(II), Cd(II), or Mn(II), for catalytic activity and that neither a redox reagent nor an organic cofactor is required for the catalytic function. The metal ions can be taken up in either cell or cell-free preparations for generating the active form of ACMSD. The kinetic parameters and enzyme specific activity are shown to depend on the metal ion present in the enzyme, suggesting a catalytic role of the metal center. EPR spectrum of Co(II)-ACMSD provides a high-spin (S = 3/2 mononuclear metal ion in a non-heme, noncorrinoid environment with a mixed nitrogen/oxygen ligand field. We observe hyperfine interactions due to 59Co nucleus at temperatures below 5 K but not at higher temperatures. Ten hyperfine lines are present in the g(perpendicular) region, and three equivalent nitrogen hyperfine couplings are required to simulate the resonances in the EPR spectrum. The results for the metal binding site are also assessed using the copper-substituted enzyme, and the EPR spectral assignments for both cobalt and copper proteins give strong support for a distorted trigonal bipyramidal geometry of the metal center. Ultimately, these results suggest for the first time that ACMSD is a metal-dependent enzyme that catalyzes a novel nonoxidative decarboxylation.

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Year:  2005        PMID: 16131206     DOI: 10.1021/ja0532234

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

1.  Human α-amino-β-carboxymuconate-ε-semialdehyde decarboxylase (ACMSD): a structural and mechanistic unveiling.

Authors:  Lu Huo; Fange Liu; Hiroaki Iwaki; Tingfeng Li; Yoshie Hasegawa; Aimin Liu
Journal:  Proteins       Date:  2014-11-21

2.  Reassignment of the human aldehyde dehydrogenase ALDH8A1 (ALDH12) to the kynurenine pathway in tryptophan catabolism.

Authors:  Ian Davis; Yu Yang; Daniel Wherritt; Aimin Liu
Journal:  J Biol Chem       Date:  2018-04-27       Impact factor: 5.157

3.  Quaternary structure of α-amino-β-carboxymuconate-ϵ-semialdehyde decarboxylase (ACMSD) controls its activity.

Authors:  Yu Yang; Ian Davis; Tsutomu Matsui; Ivan Rubalcava; Aimin Liu
Journal:  J Biol Chem       Date:  2019-06-12       Impact factor: 5.157

4.  The power of two: arginine 51 and arginine 239* from a neighboring subunit are essential for catalysis in α-amino-β-carboxymuconate-epsilon-semialdehyde decarboxylase.

Authors:  Lu Huo; Ian Davis; Lirong Chen; Aimin Liu
Journal:  J Biol Chem       Date:  2013-09-09       Impact factor: 5.157

5.  A Pitcher-and-Catcher Mechanism Drives Endogenous Substrate Isomerization by a Dehydrogenase in Kynurenine Metabolism.

Authors:  Yu Yang; Ian Davis; Uyen Ha; Yifan Wang; Inchul Shin; Aimin Liu
Journal:  J Biol Chem       Date:  2016-11-03       Impact factor: 5.157

6.  Novel 3,6-Dihydroxypicolinic Acid Decarboxylase-Mediated Picolinic Acid Catabolism in Alcaligenes faecalis JQ135.

Authors:  Jiguo Qiu; Yanting Zhang; Shigang Yao; Hao Ren; Meng Qian; Qing Hong; Zhenmei Lu; Jian He
Journal:  J Bacteriol       Date:  2019-03-13       Impact factor: 3.490

7.  The bacterial meta-cleavage hydrolase LigY belongs to the amidohydrolase superfamily, not to the α/β-hydrolase superfamily.

Authors:  Eugene Kuatsjah; Anson C K Chan; Marek J Kobylarz; Michael E P Murphy; Lindsay D Eltis
Journal:  J Biol Chem       Date:  2017-09-20       Impact factor: 5.157

8.  Observing 3-hydroxyanthranilate-3,4-dioxygenase in action through a crystalline lens.

Authors:  Yifan Wang; Kathy Fange Liu; Yu Yang; Ian Davis; Aimin Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-30       Impact factor: 11.205

9.  An Iron Reservoir to the Catalytic Metal: THE RUBREDOXIN IRON IN AN EXTRADIOL DIOXYGENASE.

Authors:  Fange Liu; Jiafeng Geng; Ryan H Gumpper; Arghya Barman; Ian Davis; Andrew Ozarowski; Donald Hamelberg; Aimin Liu
Journal:  J Biol Chem       Date:  2015-04-27       Impact factor: 5.157

10.  Evidence for a dual role of an active site histidine in α-amino-β-carboxymuconate-ε-semialdehyde decarboxylase.

Authors:  Lu Huo; Andrew J Fielding; Yan Chen; Tingfeng Li; Hiroaki Iwaki; Jonathan P Hosler; Lirong Chen; Yoshie Hasegawa; Lawrence Que; Aimin Liu
Journal:  Biochemistry       Date:  2012-07-12       Impact factor: 3.162

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