Literature DB >> 16126660

Automated phylogenetic taxonomy: an example in the homobasidiomycetes (mushroom-forming fungi).

David S Hibbett1, R Henrik Nilsson, Marc Snyder, Mario Fonseca, Janine Costanzo, Moran Shonfeld.   

Abstract

Entities:  

Mesh：

Year:  2005        PMID： 16126660     DOI： 10.1080/10635150590947104

Source DB:  PubMed          Journal:  Syst Biol        ISSN： 1063-5157            Impact factor:   15.683


× No keyword cloud information.
  12 in total

1.  Inferring the Tree of Life: chopping a phylogenomic problem down to size?

Authors:  Olaf R P Bininda-Emonds
Journal:  BMC Biol       Date:  2011-09-20       Impact factor: 7.431

2.  From genus to phylum: large-subunit and internal transcribed spacer rRNA operon regions show similar classification accuracies influenced by database composition.

Authors:  Andrea Porras-Alfaro; Kuan-Liang Liu; Cheryl R Kuske; Gary Xie
Journal:  Appl Environ Microbiol       Date:  2013-11-15       Impact factor: 4.792

3.  High diversity of the fungal community structure in naturally-occurring Ophiocordyceps sinensis.

Authors:  Yongjie Zhang; Shu Zhang; Mu Wang; Fengyan Bai; Xingzhong Liu
Journal:  PLoS One       Date:  2010-12-15       Impact factor: 3.240

4.  Approaching the taxonomic affiliation of unidentified sequences in public databases--an example from the mycorrhizal fungi.

Authors:  R Henrik Nilsson; Erik Kristiansson; Martin Ryberg; Karl-Henrik Larsson
Journal:  BMC Bioinformatics       Date:  2005-07-18       Impact factor: 3.169

5.  Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective.

Authors:  R Henrik Nilsson; Martin Ryberg; Erik Kristiansson; Kessy Abarenkov; Karl-Henrik Larsson; Urmas Kõljalg
Journal:  PLoS One       Date:  2006-12-20       Impact factor: 3.240

6.  Efficient tree searches with available algorithms.

Authors:  Gonzalo Giribet
Journal:  Evol Bioinform Online       Date:  2007-11-12       Impact factor: 1.625

7.  A software pipeline for processing and identification of fungal ITS sequences.

Authors:  R Henrik Nilsson; Gunilla Bok; Martin Ryberg; Erik Kristiansson; Nils Hallenberg
Journal:  Source Code Biol Med       Date:  2009-01-15

8.  Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota).

Authors:  Martin Ryberg; R Henrik Nilsson; Erik Kristiansson; Mats Töpel; Stig Jacobsson; Ellen Larsson
Journal:  BMC Evol Biol       Date:  2008-02-18       Impact factor: 3.260

9.  PUmPER: phylogenies updated perpetually.

Authors:  Fernando Izquierdo-Carrasco; John Cazes; Stephen A Smith; Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-28       Impact factor: 6.937

10.  ViCTree: an automated framework for taxonomic classification from protein sequences.

Authors:  Sejal Modha; Anil S Thanki; Susan F Cotmore; Andrew J Davison; Joseph Hughes
Journal:  Bioinformatics       Date:  2018-07-01       Impact factor: 6.937
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.