Literature DB >> 16126187

Highly parallel microbial diagnostics using oligonucleotide microarrays.

Alexander Loy1, Levente Bodrossy.   

Abstract

Oligonucleotide microarrays are highly parallel hybridization platforms, allowing rapid and simultaneous identification of many different microorganisms and viruses in a single assay. In the past few years, researchers have been confronted with a dramatic increase in the number of studies reporting development and/or improvement of oligonucleotide microarrays for microbial diagnostics, but use of the technology in routine diagnostics is still constrained by a variety of factors. Careful development of microarray essentials (such as oligonucleotide probes, protocols for target preparation and hybridization, etc.) combined with extensive performance testing are thus mandatory requirements for the maturation of diagnostic microarrays from fancy technological gimmicks to robust and routinely applicable tools.

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Year:  2005        PMID: 16126187     DOI: 10.1016/j.cccn.2005.05.041

Source DB:  PubMed          Journal:  Clin Chim Acta        ISSN: 0009-8981            Impact factor:   3.786


  34 in total

1.  GPR-Analyzer: a simple tool for quantitative analysis of hierarchical multispecies microarrays.

Authors:  Simon M Dittami; Bente Edvardsen
Journal:  Environ Sci Pollut Res Int       Date:  2012-07-06       Impact factor: 4.223

2.  Detection of representative enteropathogenic bacteria, Vibrio spp., pathogenic Escherichia coli, Salmonella spp., Shigella spp., and Yersinia enterocolitica, using a virulence factor gene-based oligonucleotide microarray.

Authors:  Dong-Hun Kim; Bok-Kwon Lee; Yong-Dae Kim; Sung-Keun Rhee; Young-Chang Kim
Journal:  J Microbiol       Date:  2010-11-03       Impact factor: 3.422

3.  Combining multiplex reverse transcription-PCR and a diagnostic microarray to detect and differentiate enterovirus 71 and coxsackievirus A16.

Authors:  Tsan-Chi Chen; Guang-Wu Chen; Chao Agnes Hsiung; Jyh-Yuan Yang; Shin-Ru Shih; Yiu-Kay Lai; Jyh-Lyh Juang
Journal:  J Clin Microbiol       Date:  2006-06       Impact factor: 5.948

Review 4.  Sponge-associated microorganisms: evolution, ecology, and biotechnological potential.

Authors:  Michael W Taylor; Regina Radax; Doris Steger; Michael Wagner
Journal:  Microbiol Mol Biol Rev       Date:  2007-06       Impact factor: 11.056

5.  In situ-synthesized virulence and marker gene biochip for detection of bacterial pathogens in water.

Authors:  Sarah M Miller; Dieter M Tourlousse; Robert D Stedtfeld; Samuel W Baushke; Amanda B Herzog; Lukas M Wick; Jean Marie Rouillard; Erdogan Gulari; James M Tiedje; Syed A Hashsham
Journal:  Appl Environ Microbiol       Date:  2008-02-01       Impact factor: 4.792

6.  Diagnostic microarray for 14 water and foodborne pathogens using a flatbed scanner.

Authors:  Vidya Srinivasan; Robert D Stedtfeld; Dieter M Tourlousse; Samuel W Baushke; Yu Xin; Sarah M Miller; Trinh Pham; Jean-Marie Rouillard; Erdogan Gulari; James M Tiedje; Syed A Hashsham
Journal:  J Microbiol Methods       Date:  2017-04-23       Impact factor: 2.363

7.  Detection of NASBA amplified bacterial tmRNA molecules on SLICSel designed microarray probes.

Authors:  Ott Scheler; Lauris Kaplinski; Barry Glynn; Priit Palta; Sven Parkel; Kadri Toome; Majella Maher; Thomas Barry; Maido Remm; Ants Kurg
Journal:  BMC Biotechnol       Date:  2011-02-28       Impact factor: 2.563

8.  Robust detection and identification of multiple oomycetes and fungi in environmental samples by using a novel cleavable padlock probe-based ligation detection assay.

Authors:  R van Doorn; M Slawiak; M Szemes; A M Dullemans; P Bonants; G A Kowalchuk; C D Schoen
Journal:  Appl Environ Microbiol       Date:  2009-04-24       Impact factor: 4.792

9.  Development of a microarray for identification of pathogenic Clostridium spp.

Authors:  Tavan Janvilisri; Joy Scaria; Robin Gleed; Susan Fubini; Michelle M Bonkosky; Yrjö T Gröhn; Yung-Fu Chang
Journal:  Diagn Microbiol Infect Dis       Date:  2009-10-30       Impact factor: 2.803

10.  Peptide nucleic acid-based array for detecting and genotyping human papillomaviruses.

Authors:  Jae-jin Choi; Chunhee Kim; Heekyung Park
Journal:  J Clin Microbiol       Date:  2009-04-15       Impact factor: 5.948

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