Literature DB >> 16125938

Electrochemical structure of the crowded cytoplasm.

Jan J Spitzer1, Bert Poolman.   

Abstract

The current view of the cytoplasm as a 'bustling and well-organized metropolitan city' raises the issue of how physicochemical forces control the macromolecular interactions and transport of metabolites and energy in the cell. Motivated by studies on bacterial osmosensors, we argue that charged cytoplasmic macromolecules are stabilized electrostatically by their ionic atmospheres. The high cytoplasmic crowding (25-50% of cell volume) shapes the remaining cell volume (50-75%) into transient networks of electrolyte pathways and pools. The predicted 'semi-conductivity' of the electrolyte pathways guides the flow of biochemical ions throughout the cytoplasm. This metabolic and signaling current is powered by variable electrochemical gradients between the pools. The electrochemical gradients are brought about by cellular biochemical reactions and by extracellular stimuli. The cellular metabolism is thus vectorial not only across the membrane but also throughout the cytoplasm.

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Year:  2005        PMID: 16125938     DOI: 10.1016/j.tibs.2005.08.002

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  24 in total

1.  A sensor for intracellular ionic strength.

Authors:  Esther Biemans-Oldehinkel; Nik A B N Mahmood; Bert Poolman
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-30       Impact factor: 11.205

Review 2.  The role of biomacromolecular crowding, ionic strength, and physicochemical gradients in the complexities of life's emergence.

Authors:  Jan Spitzer; Bert Poolman
Journal:  Microbiol Mol Biol Rev       Date:  2009-06       Impact factor: 11.056

Review 3.  Structure-function-folding relationships and native energy landscape of dynein light chain protein: nuclear magnetic resonance insights.

Authors:  P M Krishna Mohan; Ramakrishna V Hosur
Journal:  J Biosci       Date:  2009-09       Impact factor: 1.826

4.  Obstructed metabolite diffusion within skeletal muscle cells in silico.

Authors:  Mayis K Aliev; Alexander N Tikhonov
Journal:  Mol Cell Biochem       Date:  2011-06-28       Impact factor: 3.396

Review 5.  From water and ions to crowded biomacromolecules: in vivo structuring of a prokaryotic cell.

Authors:  Jan Spitzer
Journal:  Microbiol Mol Biol Rev       Date:  2011-09       Impact factor: 11.056

Review 6.  Microorganisms maintain crowding homeostasis.

Authors:  Jonas van den Berg; Arnold J Boersma; Bert Poolman
Journal:  Nat Rev Microbiol       Date:  2017-03-27       Impact factor: 60.633

Review 7.  Physicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs).

Authors:  Francois-Xavier Theillet; Andres Binolfi; Tamara Frembgen-Kesner; Karan Hingorani; Mohona Sarkar; Ciara Kyne; Conggang Li; Peter B Crowley; Lila Gierasch; Gary J Pielak; Adrian H Elcock; Anne Gershenson; Philipp Selenko
Journal:  Chem Rev       Date:  2014-06-05       Impact factor: 60.622

Review 8.  The depletion attraction: an underappreciated force driving cellular organization.

Authors:  Davide Marenduzzo; Kieran Finan; Peter R Cook
Journal:  J Cell Biol       Date:  2006-12-04       Impact factor: 10.539

9.  Protein charge and mass contribute to the spatio-temporal dynamics of protein-protein interactions in a minimal proteome.

Authors:  Yu Xu; Hong Wang; Ruth Nussinov; Buyong Ma
Journal:  Proteomics       Date:  2013-03-18       Impact factor: 3.984

10.  Isolation of cell nuclei using inert macromolecules to mimic the crowded cytoplasm.

Authors:  Ronald Hancock; Yasmina Hadj-Sahraoui
Journal:  PLoS One       Date:  2009-10-23       Impact factor: 3.240

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