Literature DB >> 16125444

Comparative genomics of Dictyostelium discoideum and Entamoeba histolytica.

Ludwig Eichinger1, Angelika A Noegel.   

Abstract

Amoebozoa represent one of the earliest branches from the last common ancestor of all eukaryotes and contain some of the most dangerous human pathogens. Two amoebozoan genomes -- from the model organism Dictyostelium discoideum and the human pathogen Entamoeba histolytica -- have been published this year. Owing to their high A+T content, both genomes were difficult to sequence. In addition to nine amoebozoan expressed sequence tag projects, efforts are underway for comparative sequencing of four additional Entamoeba species. The completed genome sequences of D. discoideum and E. histolytica revealed unusual telomere structures, a high percentage of repetitive elements and a remarkably high gene content that is close to the one of Drosophila melanogaster. Finally, both organisms are brilliant examples of the influence of the lifestyle of an organism on its genome.

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Year:  2005        PMID: 16125444     DOI: 10.1016/j.mib.2005.08.009

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  15 in total

1.  The choanoflagellate Monosiga brevicollis karyotype revealed by the genome sequence: telomere-linked helicase genes resemble those of some fungi.

Authors:  Hugh M Robertson
Journal:  Chromosome Res       Date:  2009-09-30       Impact factor: 5.239

2.  Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication.

Authors:  Andrew J Heidel; Hajara M Lawal; Marius Felder; Christina Schilde; Nicholas R Helps; Budi Tunggal; Francisco Rivero; Uwe John; Michael Schleicher; Ludwig Eichinger; Matthias Platzer; Angelika A Noegel; Pauline Schaap; Gernot Glöckner
Journal:  Genome Res       Date:  2011-07-14       Impact factor: 9.043

3.  Comparing the Dictyostelium and Entamoeba genomes reveals an ancient split in the Conosa lineage.

Authors:  Jie Song; Qikai Xu; Rolf Olsen; William F Loomis; Gad Shaulsky; Adam Kuspa; Richard Sucgang
Journal:  PLoS Comput Biol       Date:  2005-12-16       Impact factor: 4.475

4.  Growth of the protozoan parasite Entamoeba histolytica in 5-azacytidine has limited effects on parasite gene expression.

Authors:  Ibne Karim M Ali; Gretchen M Ehrenkaufer; Jason A Hackney; Upinder Singh
Journal:  BMC Genomics       Date:  2007-01-05       Impact factor: 3.969

5.  A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution.

Authors:  Jan O Andersson; Asa M Sjögren; David S Horner; Colleen A Murphy; Patricia L Dyal; Staffan G Svärd; John M Logsdon; Mark A Ragan; Robert P Hirt; Andrew J Roger
Journal:  BMC Genomics       Date:  2007-02-14       Impact factor: 3.969

6.  Molecular evolution of the reactive oxygen-generating NADPH oxidase (Nox/Duox) family of enzymes.

Authors:  Tsukasa Kawahara; Mark T Quinn; J David Lambeth
Journal:  BMC Evol Biol       Date:  2007-07-06       Impact factor: 3.260

7.  Short hairpin RNA-mediated knockdown of protein expression in Entamoeba histolytica.

Authors:  Alicia S Linford; Heriberto Moreno; Katelyn R Good; Hanbang Zhang; Upinder Singh; William A Petri
Journal:  BMC Microbiol       Date:  2009-02-17       Impact factor: 3.605

8.  A Toll/IL-1R/resistance domain-containing thioredoxin regulates phagocytosis in Entamoeba histolytica.

Authors:  Ismael Mancilla-Herrera; Alfonso Méndez-Tenorio; Isabel Wong-Baeza; Alexis P Jiménez-Uribe; Marcela Alcántara-Hernández; Ramon Ocadiz-Ruiz; Mario A Moreno-Eutimio; Lourdes A Arriaga-Pizano; Constantino López-Macías; Jorge González-y-Merchand; Armando Isibasi
Journal:  Parasit Vectors       Date:  2012-10-08       Impact factor: 3.876

9.  Functional insight into Maelstrom in the germline piRNA pathway: a unique domain homologous to the DnaQ-H 3'-5' exonuclease, its lineage-specific expansion/loss and evolutionarily active site switch.

Authors:  Dapeng Zhang; Huiling Xiong; Jufang Shan; Xuhua Xia; Vance L Trudeau
Journal:  Biol Direct       Date:  2008-11-25       Impact factor: 4.540

10.  Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling.

Authors:  Michael Clarke; Amanda J Lohan; Bernard Liu; Ilias Lagkouvardos; Scott Roy; Nikhat Zafar; Claire Bertelli; Christina Schilde; Arash Kianianmomeni; Thomas R Bürglin; Christian Frech; Bernard Turcotte; Klaus O Kopec; John M Synnott; Caleb Choo; Ivan Paponov; Aliza Finkler; Chris Soon Heng Tan; Andrew P Hutchins; Thomas Weinmeier; Thomas Rattei; Jeffery S C Chu; Gregory Gimenez; Manuel Irimia; Daniel J Rigden; David A Fitzpatrick; Jacob Lorenzo-Morales; Alex Bateman; Cheng-Hsun Chiu; Petrus Tang; Peter Hegemann; Hillel Fromm; Didier Raoult; Gilbert Greub; Diego Miranda-Saavedra; Nansheng Chen; Piers Nash; Michael L Ginger; Matthias Horn; Pauline Schaap; Lis Caler; Brendan J Loftus
Journal:  Genome Biol       Date:  2013-02-01       Impact factor: 13.583

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