Literature DB >> 16124862

Advances in chemical genetics.

Inese Smukste1, Brent R Stockwell.   

Abstract

Chemical genetics is an emerging approach for studying biological systems using chemical tools. This strategy aims to reveal the macromolecules responsible for regulating biological systems; thus, the approach shares much in common with genetics. In both strategies, one must (a) develop an assay that reports on a biological process of interest, (b) perturb this process systematically (with mutations or small molecules), and (c) determine the target of each perturbation to reveal macromolecules (i.e., proteins and genes) regulating the process of interest. In this review, we discuss advances and challenges in this field that have emerged over the past four years. Several technologies have converged, raising the hope that it may be possible to systematically apply chemical probes to biological processes.

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Year:  2005        PMID: 16124862     DOI: 10.1146/annurev.genom.6.080604.162136

Source DB:  PubMed          Journal:  Annu Rev Genomics Hum Genet        ISSN: 1527-8204            Impact factor:   8.929


  17 in total

1.  A chemical genetics approach reveals H,K-ATPase-mediated membrane voltage is required for planarian head regeneration.

Authors:  Wendy S Beane; Junji Morokuma; Dany S Adams; Michael Levin
Journal:  Chem Biol       Date:  2011-01-28

2.  An inhibitor of human asparagine synthetase suppresses proliferation of an L-asparaginase-resistant leukemia cell line.

Authors:  Jemy A Gutierrez; Yuan-Xiang Pan; Lukasz Koroniak; Jun Hiratake; Michael S Kilberg; Nigel G J Richards
Journal:  Chem Biol       Date:  2006-12

3.  Inverse drug screens: a rapid and inexpensive method for implicating molecular targets.

Authors:  Dany S Adams; Michael Levin
Journal:  Genesis       Date:  2006-11       Impact factor: 2.487

Review 4.  A cheminformatic toolkit for mining biomedical knowledge.

Authors:  Gus R Rosania; Gordon Crippen; Peter Woolf; David States; Kerby Shedden
Journal:  Pharm Res       Date:  2007-03-24       Impact factor: 4.200

Review 5.  Small molecule tools for functional interrogation of protein tyrosine phosphatases.

Authors:  Rongjun He; Li-Fan Zeng; Yantao He; Sheng Zhang; Zhong-Yin Zhang
Journal:  FEBS J       Date:  2012-08-16       Impact factor: 5.542

6.  Chemoproteomics-enabled covalent ligand screen reveals a cysteine hotspot in reticulon 4 that impairs ER morphology and cancer pathogenicity.

Authors:  L A Bateman; T B Nguyen; A M Roberts; D K Miyamoto; W-M Ku; T R Huffman; Y Petri; M J Heslin; C M Contreras; C F Skibola; J A Olzmann; D K Nomura
Journal:  Chem Commun (Camb)       Date:  2017-06-29       Impact factor: 6.222

Review 7.  Using small molecules to dissect mechanisms of microbial pathogenesis.

Authors:  Aaron W Puri; Matthew Bogyo
Journal:  ACS Chem Biol       Date:  2009-08-21       Impact factor: 5.100

8.  An inverse small molecule screen to design a chemically defined medium supporting long-term growth of Drosophila cell lines.

Authors:  M Burnette; T Brito-Robinson; J Li; J Zartman
Journal:  Mol Biosyst       Date:  2014-10

9.  Chemoproteomics-Enabled Covalent Ligand Screening Reveals a Thioredoxin-Caspase 3 Interaction Disruptor That Impairs Breast Cancer Pathogenicity.

Authors:  Kimberly E Anderson; Milton To; James A Olzmann; Daniel K Nomura
Journal:  ACS Chem Biol       Date:  2017-09-13       Impact factor: 5.100

10.  Chemoproteomics-Enabled Covalent Ligand Screening Reveals ALDH3A1 as a Lung Cancer Therapy Target.

Authors:  Jessica L Counihan; Amanda L Wiggenhorn; Kimberly E Anderson; Daniel K Nomura
Journal:  ACS Chem Biol       Date:  2018-07-23       Impact factor: 5.100

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