Literature DB >> 16123304

Computational improvements reveal great bacterial diversity and high metal toxicity in soil.

Jason Gans1, Murray Wolinsky, John Dunbar.   

Abstract

The complexity of soil bacterial communities has thus far confounded effective measurement. However, with improved analytical methods, we show that the abundance distribution and total diversity can be deciphered. Reanalysis of reassociation kinetics for bacterial community DNA from pristine and metal-polluted soils showed that a power law best described the abundance distributions. More than one million distinct genomes occurred in the pristine soil, exceeding previous estimates by two orders of magnitude. Metal pollution reduced diversity more than 99.9%, revealing the highly toxic effect of metal contamination, especially for rare taxa.

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Year:  2005        PMID: 16123304     DOI: 10.1126/science.1112665

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  248 in total

1.  Plant litter and soil type drive abundance, activity and community structure of alkB harbouring microbes in different soil compartments.

Authors:  Stephan Schulz; Julia Giebler; Antonis Chatzinotas; Lukas Y Wick; Ingo Fetzer; Gerhard Welzl; Hauke Harms; Michael Schloter
Journal:  ISME J       Date:  2012-03-08       Impact factor: 10.302

2.  Microbial diversity determines the invasion of soil by a bacterial pathogen.

Authors:  Jan Dirk van Elsas; Mario Chiurazzi; Cyrus A Mallon; Dana Elhottova; Václav Kristufek; Joana Falcão Salles
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-09       Impact factor: 11.205

3.  Niche specialization of terrestrial archaeal ammonia oxidizers.

Authors:  Cécile Gubry-Rangin; Brigitte Hai; Christopher Quince; Marion Engel; Bruce C Thomson; Phillip James; Michael Schloter; Robert I Griffiths; James I Prosser; Graeme W Nicol
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-08       Impact factor: 11.205

4.  Mangrove bacterial richness.

Authors:  Newton Cm Gomes; Daniel Fr Cleary; Ricardo Calado; Rodrigo Costa
Journal:  Commun Integr Biol       Date:  2011-07-01

Review 5.  Volatile mediated interactions between bacteria and fungi in the soil.

Authors:  Uta Effmert; Janine Kalderás; René Warnke; Birgit Piechulla
Journal:  J Chem Ecol       Date:  2012-06-01       Impact factor: 2.626

6.  Ecosystem biogeochemistry considered as a distributed metabolic network ordered by maximum entropy production.

Authors:  Joseph J Vallino
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-05-12       Impact factor: 6.237

Review 7.  The ecological coherence of high bacterial taxonomic ranks.

Authors:  Laurent Philippot; Siv G E Andersson; Tom J Battin; James I Prosser; Joshua P Schimel; William B Whitman; Sara Hallin
Journal:  Nat Rev Microbiol       Date:  2010-07       Impact factor: 60.633

8.  Impacts of inter- and intralaboratory variations on the reproducibility of microbial community analyses.

Authors:  Yao Pan; Levente Bodrossy; Peter Frenzel; Anne-Grethe Hestnes; Sascha Krause; Claudia Lüke; Marion Meima-Franke; Henri Siljanen; Mette M Svenning; Paul L E Bodelier
Journal:  Appl Environ Microbiol       Date:  2010-09-24       Impact factor: 4.792

9.  Networks of energetic and metabolic interactions define dynamics in microbial communities.

Authors:  Mallory Embree; Joanne K Liu; Mahmoud M Al-Bassam; Karsten Zengler
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-30       Impact factor: 11.205

10.  Predicting microbial species richness.

Authors:  Sun-Hee Hong; John Bunge; Sun-Ok Jeon; Slava S Epstein
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-20       Impact factor: 11.205

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