Literature DB >> 16118417

Codon-optimized reading frames facilitate high-level expression of the HIV-1 minor proteins.

D S Anson1, K R Dunning.   

Abstract

We have constructed reading frames for the HIV-1 YU-2 minor proteins Vpr, Vpu, Vif and Nef that are codon-optimized for high-level expression in mammalian cells. We show that, in the absence of the Rev/Rev-response element system, these codon-optimized reading frames result in greatly increased levels of expression of the corresponding proteins in cell culture systems when compared with the native reading frame. Northern blot analysis shows that the increase in expression found with the codon-optimized reading frames is largely owing to increased steady-state mRNA levels.

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Year:  2005        PMID: 16118417     DOI: 10.1385/MB:31:1:085

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  12 in total

Review 1.  HIV-1 replication.

Authors:  E O Freed
Journal:  Somat Cell Mol Genet       Date:  2001-11

Review 2.  HIV-1 Nef control of cell signalling molecules: multiple strategies to promote virus replication.

Authors:  Alison L Greenway; Gavan Holloway; Dale A McPhee; Phoebe Ellis; Alyssa Cornall; Michael Lidman
Journal:  J Biosci       Date:  2003-04       Impact factor: 1.826

Review 3.  The HIV-1 Vpu protein: a multifunctional enhancer of viral particle release.

Authors:  Stephan Bour; Klaus Strebel
Journal:  Microbes Infect       Date:  2003-09       Impact factor: 2.700

4.  A Rev-independent human immunodeficiency virus type 1 (HIV-1)-based vector that exploits a codon-optimized HIV-1 gag-pol gene.

Authors:  E Kotsopoulou; V N Kim; A J Kingsman; S M Kingsman; K A Mitrophanous
Journal:  J Virol       Date:  2000-05       Impact factor: 5.103

5.  Helper plasmids for production of HIV-1-derived vectors.

Authors:  M Fuller; D S Anson
Journal:  Hum Gene Ther       Date:  2001-11-20       Impact factor: 5.695

Review 6.  AU-rich elements: characterization and importance in mRNA degradation.

Authors:  C Y Chen; A B Shyu
Journal:  Trends Biochem Sci       Date:  1995-11       Impact factor: 13.807

Review 7.  Role of HIV-1 Vpr in AIDS pathogenesis: relevance and implications of intravirion, intracellular and free Vpr.

Authors:  Parithosh K Tungaturthi; Bassel E Sawaya; Satya P Singh; Brian Tomkowicz; Velpandi Ayyavoo; Kamel Khalili; Ronald G Collman; Shohreh Amini; Alagarsamy Srinivasan
Journal:  Biomed Pharmacother       Date:  2003-01       Impact factor: 6.529

8.  Codon optimization of the HIV-1 vpu and vif genes stabilizes their mRNA and allows for highly efficient Rev-independent expression.

Authors:  Kim-Lien Nguyen; Manuel llano; Hirofumi Akari; Eri Miyagi; Eric M Poeschla; Klaus Strebel; Stephan Bour
Journal:  Virology       Date:  2004-02-20       Impact factor: 3.616

9.  An improved beta-galactosidase reporter gene.

Authors:  D S Anson; M Limberis
Journal:  J Biotechnol       Date:  2004-02-19       Impact factor: 3.307

10.  Codon usage optimization of HIV type 1 subtype C gag, pol, env, and nef genes: in vitro expression and immune responses in DNA-vaccinated mice.

Authors:  Feng Gao; Yingying Li; Julie M Decker; Fred W Peyerl; Frederic Bibollet-Ruche; Cynthia M Rodenburg; Yalu Chen; Denise R Shaw; Susan Allen; Rosemary Musonda; George M Shaw; Allan J Zajac; Norman Letvin; Beatrice H Hahn
Journal:  AIDS Res Hum Retroviruses       Date:  2003-09       Impact factor: 2.205

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  4 in total

1.  In vitro functional assessment of natural HIV-1 group M Vpu sequences using a universal priming approach.

Authors:  Asa Rahimi; Gursev Anmole; Maribel Soto-Nava; Tania Escamilla-Gomez; Tristan Markle; Steven W Jin; Guinevere Q Lee; P Richard Harrigan; David R Bangsberg; Jeffrey Martin; Santiago Avila-Rios; Gustavo Reyes-Teran; Mark A Brockman; Zabrina L Brumme
Journal:  J Virol Methods       Date:  2016-11-16       Impact factor: 2.014

2.  Multiparameter RNA and codon optimization: a standardized tool to assess and enhance autologous mammalian gene expression.

Authors:  Stephan Fath; Asli Petra Bauer; Michael Liss; Anne Spriestersbach; Barbara Maertens; Peter Hahn; Christine Ludwig; Frank Schäfer; Marcus Graf; Ralf Wagner
Journal:  PLoS One       Date:  2011-03-03       Impact factor: 3.240

3.  HIV Rev-isited.

Authors:  Catherine Toni-Sue Truman; Aino Järvelin; Ilan Davis; Alfredo Castello
Journal:  Open Biol       Date:  2020-12-23       Impact factor: 6.411

Review 4.  The biased nucleotide composition of the HIV genome: a constant factor in a highly variable virus.

Authors:  Antoinette C van der Kuyl; Ben Berkhout
Journal:  Retrovirology       Date:  2012-11-06       Impact factor: 4.602

  4 in total

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