Literature DB >> 16108049

Graphical approach to analyzing DNA sequences.

Bo Liao1, Kequan Ding.   

Abstract

Recently, we proposed a 2D graphical representation of DNA sequence [J Comput Chem 25(2004) 1364-1368]. Based on this representation, we outline one approach to search optimal alignment. We also can judge the mutations between bases and an unknown sequence based on its graph and a known sequence's graph.

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Year:  2005        PMID： 16108049     DOI： 10.1002/jcc.20287

Source DB:  PubMed          Journal:  J Comput Chem        ISSN： 0192-8651            Impact factor:   3.376


  10 in total

1.  A study of the Immune Epitope Database for some fungi species using network topological indices.

Authors:  Severo Vázquez-Prieto; Esperanza Paniagua; Hugo Solana; Florencio M Ubeira; Humberto González-Díaz
Journal:  Mol Divers       Date:  2017-05-31       Impact factor: 2.943

2.  Study of peptide fingerprints of parasite proteins and drug-DNA interactions with Markov-Mean-Energy invariants of biopolymer molecular-dynamic lattice networks.

Authors:  Lázaro Guillermo Pérez-Montoto; María Auxiliadora Dea-Ayuela; Francisco J Prado-Prado; Francisco Bolas-Fernández; Florencio M Ubeira; Humberto González-Díaz
Journal:  Polymer (Guildf)       Date:  2009-06-03       Impact factor: 4.430

3.  A two-stage exon recognition model based on synergetic neural network.

Authors:  Zhehuang Huang; Yidong Chen
Journal:  Comput Math Methods Med       Date:  2014-03-25       Impact factor: 2.238

4.  Natural/random protein classification models based on star network topological indices.

Authors:  Cristian Robert Munteanu; Humberto González-Díaz; Fernanda Borges; Alexandre Lopes de Magalhães
Journal:  J Theor Biol       Date:  2008-07-22       Impact factor: 2.691

5.  Coronavirus phylogeny based on triplets of nucleic acids bases.

Authors:  Bo Liao; Yanshu Liu; Renfa Li; Wen Zhu
Journal:  Chem Phys Lett       Date:  2006-02-20       Impact factor: 2.328

6.  Using Gaussian model to improve biological sequence comparison.

Authors:  Qi Dai; Xiaoqing Liu; Lihua Li; Yuhua Yao; Bin Han; Lei Zhu
Journal:  J Comput Chem       Date:  2010-01-30       Impact factor: 3.376

7.  Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices.

Authors:  Alcides Perez-Bello; Cristian Robert Munteanu; Florencio M Ubeira; Alexandre Lopes De Magalhães; Eugenio Uriarte; Humberto González-Díaz
Journal:  J Theor Biol       Date:  2008-10-17       Impact factor: 2.691

8.  Multi-target QPDR classification model for human breast and colon cancer-related proteins using star graph topological indices.

Authors:  Cristian Robert Munteanu; Alexandre L Magalhães; Eugenio Uriarte; Humberto González-Díaz
Journal:  J Theor Biol       Date:  2008-12-06       Impact factor: 2.691

9.  Generalized lattice graphs for 2D-visualization of biological information.

Authors:  H González-Díaz; L G Pérez-Montoto; A Duardo-Sanchez; E Paniagua; S Vázquez-Prieto; R Vilas; M A Dea-Ayuela; F Bolas-Fernández; C R Munteanu; J Dorado; J Costas; F M Ubeira
Journal:  J Theor Biol       Date:  2009-07-29       Impact factor: 2.691

10.  QSAR for RNases and theoretic-experimental study of molecular diversity on peptide mass fingerprints of a new Leishmania infantum protein.

Authors:  Humberto González-Díaz; María A Dea-Ayuela; Lázaro G Pérez-Montoto; Francisco J Prado-Prado; Guillermín Agüero-Chapín; Francisco Bolas-Fernández; Roberto I Vazquez-Padrón; Florencio M Ubeira
Journal:  Mol Divers       Date:  2009-07-04       Impact factor: 2.943
  10 in total

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