Literature DB >> 16106753

A complete set of Escherichia coli open reading frames in mobile plasmids facilitating genetic studies.

Kimiko Saka1, Maki Tadenuma, Shinsuke Nakade, Noriko Tanaka, Hideaki Sugawara, Ken Nishikawa, Nobuyuki Ichiyoshi, Masanari Kitagawa, Hirotada Mori, Naotake Ogasawara, Akiko Nishimura.   

Abstract

To facilitate genetic studies of Escherichia coli, we constructed a complete set of mobile plasmid clones of intact open reading frames (ORFs). Their expression is strictly controlled by Ptac / lacI(q). The plasmids carrying each ORF were introduced into an F+ recA strain and stored in 96-well microtiter plates. In this way, 96 clones can be transferred simultaneously to F- bacteria using the conjugative system. This provides a convenient procedure for systematic identification of ORFs that suppress or complement mutations. We created two types of clone sets: the original set contained individual clones in 45 microtiter plates, and a second set contained pools of 48 clones stored in a single microtiter plate. Using these clone sets, we have identified 403 genes that can correct in trans the temperature-sensitive defect of cell division mutants, which would suggest multiple global regulators for bacterial cell division.

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Year:  2005        PMID: 16106753     DOI: 10.1093/dnares/12.1.63

Source DB:  PubMed          Journal:  DNA Res        ISSN: 1340-2838            Impact factor:   4.458


  47 in total

1.  The mechanosensitive channel YbdG from Escherichia coli has a role in adaptation to osmotic up-shock.

Authors:  Shun Amemiya; Hayato Toyoda; Mami Kimura; Hiromi Saito; Hiroshi Kobayashi; Kunio Ihara; Kiyoto Kamagata; Ryuji Kawabata; Setsu Kato; Yutaka Nakashimada; Tadaomi Furuta; Shin Hamamoto; Nobuyuki Uozumi
Journal:  J Biol Chem       Date:  2019-06-29       Impact factor: 5.157

2.  The Chaperone Activities of DsbG and Spy Restore Peptidoglycan Biosynthesis in the elyC Mutant by Preventing Envelope Protein Aggregation.

Authors:  Imène Kouidmi; Laura Alvarez; Jean François Collet; Felipe Cava; Catherine Paradis-Bleau
Journal:  J Bacteriol       Date:  2018-09-10       Impact factor: 3.490

3.  Functioning of a metabolic flux sensor in Escherichia coli.

Authors:  Karl Kochanowski; Benjamin Volkmer; Luca Gerosa; Bart R Haverkorn van Rijsewijk; Alexander Schmidt; Matthias Heinemann
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-31       Impact factor: 11.205

4.  SoxS increases the expression of the zinc uptake system ZnuACB in an Escherichia coli murine pyelonephritis model.

Authors:  Douglas M Warner; Stuart B Levy
Journal:  J Bacteriol       Date:  2011-12-30       Impact factor: 3.490

5.  Many chromosomal genes modulate MarA-mediated multidrug resistance in Escherichia coli.

Authors:  Cristian Ruiz; Stuart B Levy
Journal:  Antimicrob Agents Chemother       Date:  2010-03-08       Impact factor: 5.191

6.  An unmodified wobble uridine in tRNAs specific for Glutamine, Lysine, and Glutamic acid from Salmonella enterica Serovar Typhimurium results in nonviability-Due to increased missense errors?

Authors:  Kristina Nilsson; Gunilla Jäger; Glenn R Björk
Journal:  PLoS One       Date:  2017-04-21       Impact factor: 3.240

7.  In vivo structure of the E. coli FtsZ-ring revealed by photoactivated localization microscopy (PALM).

Authors:  Guo Fu; Tao Huang; Jackson Buss; Carla Coltharp; Zach Hensel; Jie Xiao
Journal:  PLoS One       Date:  2010-09-13       Impact factor: 3.240

8.  Escherichia coli SRP, its protein subunit Ffh, and the Ffh M domain are able to selectively limit membrane protein expression when overexpressed.

Authors:  Ido Yosef; Elena S Bochkareva; Eitan Bibi
Journal:  mBio       Date:  2010-06-08       Impact factor: 7.867

9.  Identification of novel serological biomarkers for inflammatory bowel disease using Escherichia coli proteome chip.

Authors:  Chien-Sheng Chen; Sean Sullivan; Troy Anderson; Aik Choon Tan; Philip J Alex; Steven R Brant; Carmen Cuffari; Theodore M Bayless; Monica V Talor; C Lynne Burek; Huan Wang; Richard Li; Lisa Wu Datta; Yuqiong Wu; Raimond L Winslow; Heng Zhu; Xuhang Li
Journal:  Mol Cell Proteomics       Date:  2009-04-07       Impact factor: 5.911

10.  Genetic analysis of repair and damage tolerance mechanisms for DNA-protein cross-links in Escherichia coli.

Authors:  Amir M H Salem; Toshiaki Nakano; Minako Takuwa; Nagisa Matoba; Tomohiro Tsuboi; Hiroaki Terato; Kazuo Yamamoto; Masami Yamada; Takehiko Nohmi; Hiroshi Ide
Journal:  J Bacteriol       Date:  2009-07-17       Impact factor: 3.490

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