Literature DB >> 16105941

Genomes on the shrink.

Howard Ochman1.   

Abstract

Mesh:

Year:  2005        PMID: 16105941      PMCID: PMC1189353          DOI: 10.1073/pnas.0505863102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


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  18 in total

Review 1.  Deletional bias and the evolution of bacterial genomes.

Authors:  A Mira; H Ochman; N A Moran
Journal:  Trends Genet       Date:  2001-10       Impact factor: 11.639

2.  Bacterial genome size reduction by experimental evolution.

Authors:  A I Nilsson; S Koskiniemi; S Eriksson; E Kugelberg; J C D Hinton; D I Andersson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-12       Impact factor: 11.205

3.  Massive gene decay in the leprosy bacillus.

Authors:  S T Cole; K Eiglmeier; J Parkhill; K D James; N R Thomson; P R Wheeler; N Honoré; T Garnier; C Churcher; D Harris; K Mungall; D Basham; D Brown; T Chillingworth; R Connor; R M Davies; K Devlin; S Duthoy; T Feltwell; A Fraser; N Hamlin; S Holroyd; T Hornsby; K Jagels; C Lacroix; J Maclean; S Moule; L Murphy; K Oliver; M A Quail; M A Rajandream; K M Rutherford; S Rutter; K Seeger; S Simon; M Simmonds; J Skelton; R Squares; S Squares; K Stevens; K Taylor; S Whitehead; J R Woodward; B G Barrell
Journal:  Nature       Date:  2001-02-22       Impact factor: 49.962

4.  Pseudogenes, junk DNA, and the dynamics of Rickettsia genomes.

Authors:  J O Andersson; S G Andersson
Journal:  Mol Biol Evol       Date:  2001-05       Impact factor: 16.240

5.  Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157.

Authors:  Qi Jin; Zhenghong Yuan; Jianguo Xu; Yu Wang; Yan Shen; Weichuan Lu; Jinhua Wang; Hong Liu; Jian Yang; Fan Yang; Xiaobing Zhang; Jiyu Zhang; Guowei Yang; Hongtao Wu; Di Qu; Jie Dong; Lilian Sun; Ying Xue; Ailan Zhao; Yishan Gao; Junping Zhu; Biao Kan; Keyue Ding; Shuxia Chen; Hongsong Cheng; Zhijian Yao; Bingkun He; Runsheng Chen; Dalong Ma; Boqin Qiang; Yumei Wen; Yunde Hou; Jun Yu
Journal:  Nucleic Acids Res       Date:  2002-10-15       Impact factor: 16.971

6.  The complete human olfactory subgenome.

Authors:  G Glusman; I Yanai; I Rubin; D Lancet
Journal:  Genome Res       Date:  2001-05       Impact factor: 9.043

7.  Genome sequence of Yersinia pestis, the causative agent of plague.

Authors:  J Parkhill; B W Wren; N R Thomson; R W Titball; M T Holden; M B Prentice; M Sebaihia; K D James; C Churcher; K L Mungall; S Baker; D Basham; S D Bentley; K Brooks; A M Cerdeño-Tárraga; T Chillingworth; A Cronin; R M Davies; P Davis; G Dougan; T Feltwell; N Hamlin; S Holroyd; K Jagels; A V Karlyshev; S Leather; S Moule; P C Oyston; M Quail; K Rutherford; M Simmonds; J Skelton; K Stevens; S Whitehead; B G Barrell
Journal:  Nature       Date:  2001-10-04       Impact factor: 49.962

8.  Engineering a reduced Escherichia coli genome.

Authors:  Vitaliy Kolisnychenko; Guy Plunkett; Christopher D Herring; Tamás Fehér; János Pósfai; Frederick R Blattner; György Pósfai
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

9.  The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes.

Authors:  Rosario Gil; Francisco J Silva; Evelyn Zientz; François Delmotte; Fernando González-Candelas; Amparo Latorre; Carolina Rausell; Judith Kamerbeek; Jürgen Gadau; Bert Hölldobler; Roeland C H J van Ham; Roy Gross; Andrés Moya
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-28       Impact factor: 11.205

10.  Reductive genome evolution in Buchnera aphidicola.

Authors:  Roeland C H J van Ham; Judith Kamerbeek; Carmen Palacios; Carolina Rausell; Federico Abascal; Ugo Bastolla; Jose M Fernández; Luis Jiménez; Marina Postigo; Francisco J Silva; Javier Tamames; Enrique Viguera; Amparo Latorre; Alfonso Valencia; Federico Morán; Andrés Moya
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-09       Impact factor: 11.205

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  20 in total

Review 1.  Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria.

Authors:  Beile Gao; Radhey S Gupta
Journal:  Microbiol Mol Biol Rev       Date:  2012-03       Impact factor: 11.056

2.  Enigmatic, ultrasmall, uncultivated Archaea.

Authors:  Brett J Baker; Luis R Comolli; Gregory J Dick; Loren J Hauser; Doug Hyatt; Brian D Dill; Miriam L Land; Nathan C Verberkmoes; Robert L Hettich; Jillian F Banfield
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

Review 3.  Review. Genetic exchange and the origin of adaptations: prokaryotes to primates.

Authors:  Michael L Arnold; Yuval Sapir; Noland H Martin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-09-12       Impact factor: 6.237

Review 4.  Gene Transfer Agents in Symbiotic Microbes.

Authors:  Steen Christensen; Laura R Serbus
Journal:  Results Probl Cell Differ       Date:  2020

Review 5.  Realizing Microbial Evolution.

Authors:  Howard Ochman
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-05-02       Impact factor: 10.005

6.  Comparative genomics of the lactic acid bacteria.

Authors:  K Makarova; A Slesarev; Y Wolf; A Sorokin; B Mirkin; E Koonin; A Pavlov; N Pavlova; V Karamychev; N Polouchine; V Shakhova; I Grigoriev; Y Lou; D Rohksar; S Lucas; K Huang; D M Goodstein; T Hawkins; V Plengvidhya; D Welker; J Hughes; Y Goh; A Benson; K Baldwin; J-H Lee; I Díaz-Muñiz; B Dosti; V Smeianov; W Wechter; R Barabote; G Lorca; E Altermann; R Barrangou; B Ganesan; Y Xie; H Rawsthorne; D Tamir; C Parker; F Breidt; J Broadbent; R Hutkins; D O'Sullivan; J Steele; G Unlu; M Saier; T Klaenhammer; P Richardson; S Kozyavkin; B Weimer; D Mills
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-09       Impact factor: 11.205

7.  Complete genome sequence of Haemophilus parasuis SH0165.

Authors:  Min Yue; Fan Yang; Jian Yang; Weicheng Bei; Xuwang Cai; Lihong Chen; Jie Dong; Rui Zhou; Meilin Jin; Qi Jin; Huanchun Chen
Journal:  J Bacteriol       Date:  2008-12-12       Impact factor: 3.490

8.  Evolutionary trajectory of white spot syndrome virus (WSSV) genome shrinkage during spread in Asia.

Authors:  Mark P Zwart; Bui Thi Minh Dieu; Lia Hemerik; Just M Vlak
Journal:  PLoS One       Date:  2010-10-14       Impact factor: 3.240

Review 9.  Omics strategies for revealing Yersinia pestis virulence.

Authors:  Ruifu Yang; Zongmin Du; Yanping Han; Lei Zhou; Yajun Song; Dongsheng Zhou; Yujun Cui
Journal:  Front Cell Infect Microbiol       Date:  2012-12-13       Impact factor: 5.293

10.  Analysis of complete genomes of Propionibacterium acnes reveals a novel plasmid and increased pseudogenes in an acne associated strain.

Authors:  Gabriela Kasimatis; Sorel Fitz-Gibbon; Shuta Tomida; Marthew Wong; Huiying Li
Journal:  Biomed Res Int       Date:  2013-05-13       Impact factor: 3.411

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