Literature DB >> 16099644

Bacterial chromatin.

Andrew Travers1, Georgi Muskhelishvili.   

Abstract

Recent studies have revealed that the bacterial nucleoid is a dynamic entity that alters its overall structure in response to changes in both growth rate and growth phase. These structural changes are correlated with, and might be driven by, changes in the distribution and utilization of DNA supercoiling. In turn, these parameters in addition to the delimitation of topological domains are dependent both on the relative proportions of the abundant nucleoid-associated proteins and on transcriptional activity. The domain structure itself is dynamic.

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Year:  2005        PMID: 16099644     DOI: 10.1016/j.gde.2005.08.006

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  62 in total

1.  Dividing a supercoiled DNA molecule into two independent topological domains.

Authors:  Fenfei Leng; Bo Chen; David D Dunlap
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-28       Impact factor: 11.205

2.  The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.

Authors:  Stefano Stella; Duilio Cascio; Reid C Johnson
Journal:  Genes Dev       Date:  2010-04-15       Impact factor: 11.361

3.  B-DNA under stress: over- and untwisting of DNA during molecular dynamics simulations.

Authors:  Srinivasaraghavan Kannan; Kai Kohlhoff; Martin Zacharias
Journal:  Biophys J       Date:  2006-07-21       Impact factor: 4.033

Review 4.  Ferritins: iron/oxygen biominerals in protein nanocages.

Authors:  Elizabeth C Theil; Manolis Matzapetakis; Xiaofeng Liu
Journal:  J Biol Inorg Chem       Date:  2006-07-26       Impact factor: 3.358

5.  Internal structure and dynamics of isolated Escherichia coli nucleoids assessed by fluorescence correlation spectroscopy.

Authors:  Tatyana Romantsov; Itzhak Fishov; Oleg Krichevsky
Journal:  Biophys J       Date:  2007-01-26       Impact factor: 4.033

6.  Active transcription of rRNA operons condenses the nucleoid in Escherichia coli: examining the effect of transcription on nucleoid structure in the absence of transertion.

Authors:  Julio E Cabrera; Cedric Cagliero; Selwyn Quan; Catherine L Squires; Ding Jun Jin
Journal:  J Bacteriol       Date:  2009-04-24       Impact factor: 3.490

Review 7.  Integration of syntactic and semantic properties of the DNA code reveals chromosomes as thermodynamic machines converting energy into information.

Authors:  Georgi Muskhelishvili; Andrew Travers
Journal:  Cell Mol Life Sci       Date:  2013-06-15       Impact factor: 9.261

8.  Coordination of genomic structure and transcription by the main bacterial nucleoid-associated protein HU.

Authors:  Michael Berger; Anca Farcas; Marcel Geertz; Petya Zhelyazkova; Klaudia Brix; Andrew Travers; Georgi Muskhelishvili
Journal:  EMBO Rep       Date:  2009-11-13       Impact factor: 8.807

9.  Depletion of RNase HI activity in Escherichia coli lacking DNA topoisomerase I leads to defects in DNA supercoiling and segregation.

Authors:  Valentine Usongo; Flora Nolent; Patrick Sanscartier; Cynthia Tanguay; Sonia Broccoli; Imad Baaklini; Karl Drlica; Marc Drolet
Journal:  Mol Microbiol       Date:  2008-06-28       Impact factor: 3.501

Review 10.  Mechanisms and evolution of control logic in prokaryotic transcriptional regulation.

Authors:  Sacha A F T van Hijum; Marnix H Medema; Oscar P Kuipers
Journal:  Microbiol Mol Biol Rev       Date:  2009-09       Impact factor: 11.056

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